EY650037

Overview
NameEY650037
Unique NameEY650037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_AGRST (ATP synthase subunit b, chloroplastic OS=Agrostis stolonifera GN=atpF PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.177e-18
Identity = 50/99 (50.51%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLIS 621
            IL++IRNSEEL+RG IE+LEKAR RL+K+E+EAD+ R+NGYSEI R K  +I     +L+  E  K+ET++FE            F  A+QG L TL S
Sbjct:   60 ILSTIRNSEELRRGTIEQLEKARIRLQKVELEADEYRMNGYSEIEREKANLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNS 158
[Close]
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_LOLPR (ATP synthase subunit b, chloroplastic OS=Lolium perenne GN=atpF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.224e-17
Identity = 49/99 (49.49%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLIS 621
            IL++IRNSEEL+RG IE+LEKAR RL+K+E+EAD+ R+NGYS+I R K  +I     +L+  E  K+ET++FE            F  A+QG L TL S
Sbjct:   60 ILSTIRNSEELRRGTIEKLEKARIRLQKVELEADEYRMNGYSDIEREKANLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNS 158
[Close]
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_SACOF (ATP synthase subunit b, chloroplastic OS=Saccharum officinarum GN=atpF PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.599e-17
Identity = 49/99 (49.49%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLIS 621
            IL++IRNSEEL+RG +E+LEKAR RL+K+E+EAD+ R+NGYSEI R K  +I     +L+  E  K+ET++FE            F  A+QG L TL S
Sbjct:   60 ILSTIRNSEELRRGTLEQLEKARIRLQKVELEADEYRMNGYSEIEREKENLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNS 158
[Close]
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_SACHY (ATP synthase subunit b, chloroplastic OS=Saccharum hybrid GN=atpF PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.599e-17
Identity = 49/99 (49.49%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLIS 621
            IL++IRNSEEL+RG +E+LEKAR RL+K+E+EAD+ R+NGYSEI R K  +I     +L+  E  K+ET++FE            F  A+QG L TL S
Sbjct:   60 ILSTIRNSEELRRGTLEQLEKARIRLQKVELEADEYRMNGYSEIEREKENLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNS 158
[Close]
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_OENPA (ATP synthase subunit b, chloroplastic OS=Oenothera parviflora GN=atpF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.727e-17
Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLIS 621
            ILN+IRNSEEL+ GAIE+LEKARARL+ +++EA+  R  GY  I   +   I   YKTL+  EN K+E+IHFE            F  ALQG L TL S
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLQDVQIEAEGYRAYGYFGIDEQRHESINSTYKTLEQLENNKNESIHFEQQRAINQVRQQIFQQALQGALGTLNS 158
[Close]
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_OENGL (ATP synthase subunit b, chloroplastic OS=Oenothera glazioviana GN=atpF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.727e-17
Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLIS 621
            ILN+IRNSEEL+ GAIE+LEKARARL+ +++EA+  R  GY  I   +   I   YKTL+  EN K+E+IHFE            F  ALQG L TL S
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLQDVQIEAEGYRAYGYFGIDEQRHESINSTYKTLEQLENNKNESIHFEQQRAINQVRQQIFQQALQGALGTLNS 158
[Close]
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_OENEH (ATP synthase subunit b, chloroplastic OS=Oenothera elata subsp. hookeri GN=atpF PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.727e-17
Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLIS 621
            ILN+IRNSEEL+ GAIE+LEKARARL+ +++EA+  R  GY  I   +   I   YKTL+  EN K+E+IHFE            F  ALQG L TL S
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLQDVQIEAEGYRAYGYFGIDEQRHESINSTYKTLEQLENNKNESIHFEQQRAINQVRQQIFQQALQGALGTLNS 158
[Close]
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_OENBI (ATP synthase subunit b, chloroplastic OS=Oenothera biennis GN=atpF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.727e-17
Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLIS 621
            ILN+IRNSEEL+ GAIE+LEKARARL+ +++EA+  R  GY  I   +   I   YKTL+  EN K+E+IHFE            F  ALQG L TL S
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLQDVQIEAEGYRAYGYFGIDEQRHESINSTYKTLEQLENNKNESIHFEQQRAINQVRQQIFQQALQGALGTLNS 158
[Close]
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_OENAR (ATP synthase subunit b, chloroplastic OS=Oenothera argillicola GN=atpF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.727e-17
Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLIS 621
            ILN+IRNSEEL+ GAIE+LEKARARL+ +++EA+  R  GY  I   +   I   YKTL+  EN K+E+IHFE            F  ALQG L TL S
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLQDVQIEAEGYRAYGYFGIDEQRHESINSTYKTLEQLENNKNESIHFEQQRAINQVRQQIFQQALQGALGTLNS 158
[Close]
BLAST of EY650037 vs. ExPASy Swiss-Prot
Match: ATPF_BRADI (ATP synthase subunit b, chloroplastic OS=Brachypodium distachyon GN=atpF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.727e-17
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:  325 ILNSIRNSEELQRGAIERLEKARARLRKIEVEADQVRVNGYSEIARHKFIVIKFAYKTLDASENYKDETIHFEXXXXXXXXXXXXFPTALQGGLRTLIS 621
            IL++IRNSEEL+RG  E+LEKAR RL+K+E+EAD+ R+NGYSEI R K  +I     +L+  E  K+ET++FE            F  A+QG L TL S
Sbjct:   60 ILSTIRNSEELRRGTFEQLEKARIRLQKVELEADEYRMNGYSEIEREKENLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNS 158
The following BLAST results are available for this feature:
BLAST of EY650037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
ATPF_AGRST7.177e-1850.51ATP synthase subunit b, chloroplastic OS=Agrostis ... [more]
ATPF_LOLPR1.224e-1749.49ATP synthase subunit b, chloroplastic OS=Lolium pe... [more]
ATPF_SACOF1.599e-1749.49ATP synthase subunit b, chloroplastic OS=Saccharum... [more]
ATPF_SACHY1.599e-1749.49ATP synthase subunit b, chloroplastic OS=Saccharum... [more]
ATPF_OENPA2.727e-1750.51ATP synthase subunit b, chloroplastic OS=Oenothera... [more]
ATPF_OENGL2.727e-1750.51ATP synthase subunit b, chloroplastic OS=Oenothera... [more]
ATPF_OENEH2.727e-1750.51ATP synthase subunit b, chloroplastic OS=Oenothera... [more]
ATPF_OENBI2.727e-1750.51ATP synthase subunit b, chloroplastic OS=Oenothera... [more]
ATPF_OENAR2.727e-1750.51ATP synthase subunit b, chloroplastic OS=Oenothera... [more]
ATPF_BRADI2.727e-1749.49ATP synthase subunit b, chloroplastic OS=Brachypod... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-006-E03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650037 ID=EY650037; Name=EY650037; organism=Citrus sinensis; type=EST; length=822bp
ATAAAAAAATAAACAACTTTGCTGACAATTATATATTTTGATTCGGTCAG
AAGAGTCCTCCGAATATTCTGTTCTTGGATTATGGATCAGTCGCAAGATT
CATTTTGGAATATGAATAGAGAAGAGAGGGAGAGGATAGGCTCATTACAT
TAAAAAAGATATGGGAACCCCCCCCATACATAAGTAGTTGACGTAATTGA
GTGGGAGAGCCAAATGAATCGAAAAATTCATGTTTGGTTCGGGAAGGGAT
CATCGAAGTTTTGAGATGAATGGAAAGATAATCTACTTTCATTAAGTGAT
TTATTAGATAATCGCAAACTGAGGATTCTGAATAGTATTCGAAATTCAGA
AGAACTGCAGAGAGGGGCCATTGAACGGCTGGAAAAAGCCCGGGCCCGGC
TACGAAAAATAGAAGTAGAAGCAGATCAGGTTCGAGTGAATGGATACTCT
GAGATAGCACGACATAAATTCATTGTGATTAAGTTCGCTTATAAGACTTT
GGATGCATCAGAAAATTACAAAGATGAAACCATTCATTTTGAACAACAAA
GAGCAGTTAATCAAGTCCGACAACGGGTTTTTCCAACAGCTTTACAAGGA
GGGCTCCGCACTCTGATTAGCTGGTGTGACCAGGGAGTGACTTTTACGTC
CCATTTGGGGCCCATATGGGCGTGGTTGGGAGGCGTGGAAGGAATAAACC
GGATTAGTCCTTTTGACTGGGAACGAGTTGAGGGCTTTTTGTGCTGGTGG
AGGAGGACAAGGGTGGTGCAACTCCGTGTGGCCGCCACGTACGGCCCGCG
AGGGTGGTTTGAGTGTCCCGCA
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