EY650013 | Citrus Genome Database

Overview


Name	EY650013
Unique Name	EY650013
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	936

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY650013 vs. ExPASy Swiss-Prot
Match: GELS_BOVIN (Gelsolin OS=Bos taurus GN=GSN PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.219e-21
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1

Query:  364 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLETTPGKGGAYLDDIHFWMGKE 552
            P F  AG+  G +IWR+E F  VP+P + +G F+ GD Y++L+T   + G    D+H+W+G E
Sbjct:    6 PEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNE 68

HSP 2 Score: 53.9138 bits (128), Expect = 7.219e-21
Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 2

Query:  560 DEXGTAAIKTVELDACLGGRAVQHRELQGRGSDKFLGYLKRWVIHWGGG 706
            DE G AAI TV+LD  L GRAVQHRE+QG  S  FLGY K  + +  GG
Sbjct:   72 DESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG 120

[Close]

BLAST of EY650013 vs. ExPASy Swiss-Prot
Match: ADSV_BOVIN (Adseverin OS=Bos taurus GN=SCIN PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.222e-21
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 1

Query:  370 FQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLETTPGKGGAYLDDIHFWMGKE 552
            F  AG+R G ++WRIE  + VP+P+S +G FY+GD Y+VL TT    G +   +HFW+GKE
Sbjct:   10 FARAGKRAGLQVWRIEKLELVPVPESAYGNFYVGDAYLVLHTTQASRG-FTYRLHFWLGKE 69

HSP 2 Score: 49.6766 bits (117), Expect = 7.222e-21
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 2

Query:  560 DEXGTAAIKTVELDACLGGRAVQHRELQGRGSDKFLGYLKRWVIHWGGGG*LAGVEK--RRDRNRKRGGSLQGKRVCKKSE 796
            DE   AAI TV++D  LGG+ VQ+RELQG  S  F+GY K   + +  GG  +G+      D   +R   ++G+RV + +E
Sbjct:   73 DESTAAAIFTVQMDDYLGGKPVQNRELQGYESTDFVGYFKGG-LKYKAGGVASGLNHVLTNDLTAQRLLHVKGRRVVRATE 152

[Close]

BLAST of EY650013 vs. ExPASy Swiss-Prot
Match: GELS_RAT (Gelsolin OS=Rattus norvegicus GN=Gsn PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.064e-20
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1

Query:  364 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLETTPGKGGAYLDDIHFWMGKE 552
            P F  AG+  G +IWR+E F  VP+P + +G F+ GD Y++L+T   + G    D+H+W+G E
Sbjct:   55 PEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNE 117

HSP 2 Score: 52.373 bits (124), Expect = 2.064e-20
Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 2

Query:  560 DEXGTAAIKTVELDACLGGRAVQHRELQGRGSDKFLGYLKRWVIHWGGG 706
            DE G AAI TV+LD  L GRAVQHRE+QG  S  F GY K  + +  GG
Sbjct:  121 DESGAAAIFTVQLDDYLNGRAVQHREVQGFESSTFQGYFKSGLKYKKGG 169

[Close]

BLAST of EY650013 vs. ExPASy Swiss-Prot
Match: GELS_MOUSE (Gelsolin OS=Mus musculus GN=Gsn PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 2.064e-20
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1

Query:  364 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLETTPGKGGAYLDDIHFWMGKE 552
            P F  AG+  G +IWR+E F  VP+P + +G F+ GD Y++L+T   + G    D+H+W+G E
Sbjct:   55 PEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNE 117

HSP 2 Score: 52.373 bits (124), Expect = 2.064e-20
Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 2

Query:  560 DEXGTAAIKTVELDACLGGRAVQHRELQGRGSDKFLGYLKRWVIHWGGG 706
            DE G AAI TV+LD  L GRAVQHRE+QG  S  F GY K  + +  GG
Sbjct:  121 DESGAAAIFTVQLDDYLNGRAVQHREVQGFESSTFSGYFKSGLKYKKGG 169

[Close]

BLAST of EY650013 vs. ExPASy Swiss-Prot
Match: ADSV_HUMAN (Adseverin OS=Homo sapiens GN=SCIN PE=1 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 2.688e-20
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1

Query:  370 FQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLETTPGKGGAYLDDIHFWMGKE 552
            F  AG++ G ++WRIE  + VP+P+S HG FY+GD Y+VL T     G +   +HFW+GKE
Sbjct:   10 FARAGKQAGLQVWRIEKLELVPVPQSAHGDFYVGDAYLVLHTAKTSRG-FTYHLHFWLGKE 69

HSP 2 Score: 49.6766 bits (117), Expect = 2.688e-20
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 2

Query:  560 DEXGTAAIKTVELDACLGGRAVQHRELQGRGSDKFLGYLKRWVIHWGGGG*LAGVEK--RRDRNRKRGGSLQGKRVCKKSE 796
            DE   AAI TV++D  LGG+ VQ+RELQG  S+ F+ Y K   + +  GG  +G+      D   KR   ++G+RV + +E
Sbjct:   73 DESTAAAIFTVQMDDYLGGKPVQNRELQGYESNDFVSYFKGG-LKYKAGGVASGLNHVLTNDLTAKRLLHVKGRRVVRATE 152

[Close]

BLAST of EY650013 vs. ExPASy Swiss-Prot
Match: ADSV_MOUSE (Adseverin OS=Mus musculus GN=Scin PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.497e-20
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 1

Query:  364 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLETTPGKGGAYLDDIHFWMGKE 552
            P F  AGQ+ G ++WR+E  + VP+P+  +G FY+G+ Y+VL TT    G +   +HFW+GKE
Sbjct:    8 PEFARAGQQAGLQVWRVEKLELVPVPQGAYGDFYVGEPYLVLHTTKSSRG-FSYRLHFWLGKE 69

HSP 2 Score: 50.447 bits (119), Expect = 3.497e-20
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 2

Query:  560 DEXGTAAIKTVELDACLGGRAVQHRELQGRGSDKFLGYLKRWVIHWGGGG*LAGVEK--RRDRNRKRGGSLQGKRVCKKSE 796
            DE   AAI TV++D  LGG+ VQ RELQG  S  F+GY K   + +  GG  +G+      D   KR   ++G+RV + +E
Sbjct:   73 DESTAAAIFTVQMDDYLGGKPVQSRELQGYESTDFVGYFKGG-LKYKAGGVASGLNHVLTNDLTAKRLLHVKGRRVVRATE 152

[Close]

BLAST of EY650013 vs. ExPASy Swiss-Prot
Match: SEVE_DICDI (Severin OS=Dictyostelium discoideum GN=sevA PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.992e-20
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 1

Query:  349 AKSLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLETTPGKGGAYLDDIHFWMG 546
            A S +  ++G GQ  G +IWRIENF+ VP+P+S +GKFY GD YI+L T   +G +   DIHF++G
Sbjct:   29 AASTEAQWKGVGQAPGLKIWRIENFKVVPVPESSYGKFYDGDSYIILHTFK-EGNSLKHDIHFFLG 93

HSP 2 Score: 46.2098 bits (108), Expect = 5.992e-20
Identity = 24/48 (50.00%), Postives = 29/48 (60.42%), Query Frame = 2

Query:  560 DEXGTAAIKTVELDACLGGRAVQHRELQGRGSDKFLGYLKRWVIHWGG 703
            DE GTAA KTVELD  LGG  +Q+R+ Q   S  FL    ++ I  GG
Sbjct:   99 DEAGTAAYKTVELDDFLGGAPIQYRQCQSYESPSFLSLFPKYFILSGG 146

[Close]

BLAST of EY650013 vs. ExPASy Swiss-Prot
Match: VILI_CHICK (Villin-1 OS=Gallus gallus GN=VIL1 PE=1 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 6.275e-19
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1

Query:  394 GTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLET-TPGKGGAYLDDIHFWMGK 549
            G +IWRIEN + VP+P   +G FY GDCY++L T   G G +Y  +IH+W+GK
Sbjct:   18 GIQIWRIENMEMVPVPTKSYGNFYEGDCYVLLSTRKTGSGFSY--NIHYWLGK 68

HSP 2 Score: 50.8322 bits (120), Expect = 6.275e-19
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 2

Query:  560 DEXGTAAIKTVELDACLGGRAVQHRELQGRGSDKFLGYLKRWVIHWGGG 706
            DE G AAI T ++D  LG  AVQHRE+QG  S+ F  Y K+ +I+  GG
Sbjct:   73 DEQGAAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLIYKQGG 121

[Close]

BLAST of EY650013 vs. ExPASy Swiss-Prot
Match: AVIL_HUMAN (Advillin OS=Homo sapiens GN=AVIL PE=1 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 5.127e-18
Identity = 27/65 (41.54%), Postives = 36/65 (55.38%), Query Frame = 1

Query:  358 LDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLETTPGKGGAYLDDIHFWMGKE 552
            L  AF+      G  +WRIE  +   +P S HG FY GDCY++L +T         DIHFW+GK+
Sbjct:    3 LTSAFRAVDNDPGIIVWRIEKMELALVPVSAHGNFYEGDCYVIL-STRRVASLLSQDIHFWIGKD 66

HSP 2 Score: 51.9878 bits (123), Expect = 5.127e-18
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 2

Query:  560 DEXGTAAIKTVELDACLGGRAVQHRELQGRGSDKFLGYLKRWVIHWGGGG*LAGVEKRRDRNR---KRGGSLQGKRVCKKSE 796
            DE   AAI T +LD  LGG  VQHRE+Q   SD F GY K+ +I+  GG  +A   K  + N    KR   ++GKR  + +E
Sbjct:   70 DEQSCAAIYTTQLDDYLGGSPVQHREVQYHESDTFRGYFKQGIIYKQGG--VASGMKHVETNTYDVKRLLHVKGKRNIRATE 149

[Close]

BLAST of EY650013 vs. ExPASy Swiss-Prot
Match: AVIL_MOUSE (Advillin OS=Mus musculus GN=Avil PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.465e-17
Identity = 29/66 (43.94%), Postives = 36/66 (54.55%), Query Frame = 1

Query:  355 SLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLETTPGKGGAYLDDIHFWMGKE 552
            SL  AF+          WRIE  +   +P S HG FY GDCYIVL +T   G     +IHFW+GK+
Sbjct:    2 SLSSAFRAVSNDPRIITWRIEKMELALVPLSAHGNFYEGDCYIVL-STRRVGSLLSQNIHFWIGKD 66

HSP 2 Score: 51.6026 bits (122), Expect = 1.465e-17
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 2

Query:  560 DEXGTAAIKTVELDACLGGRAVQHRELQGRGSDKFLGYLKRWVIHWGGGG*LAGVEKRRDRNR---KRGGSLQGKRVCKKSE 796
            DE   AAI T +LD  LGG  VQHRE+Q   SD F GY K+ +I+  GG  +A   K  + N    KR   ++GKR  + +E
Sbjct:   70 DEQSCAAIYTTQLDDYLGGSPVQHREVQYHESDTFRGYFKQGIIYKKGG--VASGMKHVETNTYDVKRLLHVKGKRNIQATE 149

The following BLAST results are available for this feature:

BLAST of EY650013 vs. ExPASy Swiss-Prot

BLAST of EY650013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29


Match Name	E-value	Identity	Description
GELS_BOVIN	7.219e-21	41.27	Gelsolin OS=Bos taurus GN=GSN PE=2 SV=1	[more]
ADSV_BOVIN	7.222e-21	49.18	Adseverin OS=Bos taurus GN=SCIN PE=1 SV=1	[more]
GELS_RAT	2.064e-20	41.27	Gelsolin OS=Rattus norvegicus GN=Gsn PE=1 SV=1	[more]
GELS_MOUSE	2.064e-20	41.27	Gelsolin OS=Mus musculus GN=Gsn PE=1 SV=3	[more]
ADSV_HUMAN	2.688e-20	47.54	Adseverin OS=Homo sapiens GN=SCIN PE=1 SV=4	[more]
ADSV_MOUSE	3.497e-20	44.44	Adseverin OS=Mus musculus GN=Scin PE=1 SV=2	[more]
SEVE_DICDI	5.992e-20	50.00	Severin OS=Dictyostelium discoideum GN=sevA PE=1 S...	[more]
VILI_CHICK	6.275e-19	50.94	Villin-1 OS=Gallus gallus GN=VIL1 PE=1 SV=2	[more]
AVIL_HUMAN	5.127e-18	41.54	Advillin OS=Homo sapiens GN=AVIL PE=1 SV=2	[more]
AVIL_MOUSE	1.465e-17	43.94	Advillin OS=Mus musculus GN=Avil PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-006-C02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY650013 ID=EY650013; Name=EY650013; organism=Citrus sinensis; type=EST; length=936bp
TTCATTTTTCTCTCTCTATCTCTTTCGGGAGGGCGGGGGGCTGAAAAGAC
CCCCAACGAATTAAAAAAAAAAAAAAGTTAGAGAGAGAGCCCAGAACCCA
CAGCACACACACAACACAACCTCCTCAATTATTCACTTTTCTTTCTCTTT
TCCCCAGTATCTTTTATTTGCCAGCTTTTCCTTTTTTCGGAGTGCATCAT
CACTCTTCACACACACACACATTGAGATCCCTCTCTCTGGGTCTTTAAGT
GAATATTACAGTTTCGAGGTAGCAAAATCATCGAGTCTTTATTCTGTTTG
TGATTATAATAACAGTAATAAAGAAGGATTTTGAGGATGGCTACCTCTGC
AAAATCTTTGGATCCTGCATTTCAAGGAGCGGGTCAGAGAGTTGGTACTG
AAATTTGGCGAATTGAGAATTTTCAACCGGTTCCATTGCCTAAGTCTGAA
CATGGAAAATTCTATATGGGGGATTGCTACATCGTCTTGGAGACAACACC
TGGCAAGGGAGGGGCTTATCTGGATGACATACATTTCTGGATGGGAAAAG
AACAAGTAGGATGAANCTGGAACAGCAGCTATTAAAACTGTGGAACTTGA
TGCCTGTCTTGGAGGGCGGGCAGTTCAACACCGGGAACTTCAAGGGCGTG
GATCTGACAAATTTTTGGGCTATTTGAAGCGCTGGGTTATACACTGGGGG
GGGGGGGGGTGACTCGCGGGTGTAGAAAAACGGAGGGACAGAAATCGAAA
GAGGGGTGGCTCTCTGCAGGGGAAACGAGTCTGCAAAAAAAGCGAGGGCC
TTGTCGGTGGTCTGCACTGATCAAGAGGGAGGGGTGTTTCGGGGACCTAG
GGAGGGGTCTTGCGTTGAGGGGCGCAATGTCATGGCGGGAAGGGGCGGGG
CGGAGGAGGATGACCGTTCGGGGAGAAGCCCGGCGG