EY649989

Overview
NameEY649989
Unique NameEY649989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_WHEAT (50S ribosomal protein L23, chloroplastic OS=Triticum aestivum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.402e-26
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKRN 525
            MDGIKYAVFT+KS+RLLGKNQYTFNVESG T TEIKHWVELFFGVK  A+NSH+LP KG +MG   G T H  +    L+ PGYSI    +++N
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQ-PGYSIPLLDREKN 93          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_ORYSJ (50S ribosomal protein L23, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.402e-26
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKRN 525
            MDGIKYAVFT+KS+RLLGKNQYTFNVESG T TEIKHWVELFFGVK  A+NSH+LP KG +MG   G T H  +    L+ PGYSI    +++N
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQ-PGYSIPLLDREKN 93          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_ORYSI (50S ribosomal protein L23, chloroplastic OS=Oryza sativa subsp. indica GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.402e-26
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKRN 525
            MDGIKYAVFT+KS+RLLGKNQYTFNVESG T TEIKHWVELFFGVK  A+NSH+LP KG +MG   G T H  +    L+ PGYSI    +++N
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQ-PGYSIPLLDREKN 93          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_ORYSA (50S ribosomal protein L23, chloroplastic OS=Oryza sativa GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.402e-26
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKRN 525
            MDGIKYAVFT+KS+RLLGKNQYTFNVESG T TEIKHWVELFFGVK  A+NSH+LP KG +MG   G T H  +    L+ PGYSI    +++N
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQ-PGYSIPLLDREKN 93          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_ORYNI (50S ribosomal protein L23, chloroplastic OS=Oryza nivara GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.402e-26
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKRN 525
            MDGIKYAVFT+KS+RLLGKNQYTFNVESG T TEIKHWVELFFGVK  A+NSH+LP KG +MG   G T H  +    L+ PGYSI    +++N
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQ-PGYSIPLLDREKN 93          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_JASNU (50S ribosomal protein L23, chloroplastic OS=Jasminum nudiflorum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.402e-26
Identity = 65/93 (69.89%), Postives = 70/93 (75.27%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFT+KSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTEKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_OENEH (50S ribosomal protein L23, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.443e-26
Identity = 64/93 (68.82%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDK +RLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKGVRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVQAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_NANDO (50S ribosomal protein L23, chloroplastic OS=Nandina domestica GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.443e-26
Identity = 65/93 (69.89%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLG NQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_TOBAC (50S ribosomal protein L23, chloroplastic OS=Nicotiana tabacum GN=rpl23-A PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.802e-26
Identity = 65/93 (69.89%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP K  +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_SOLTU (50S ribosomal protein L23, chloroplastic OS=Solanum tuberosum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.802e-26
Identity = 65/93 (69.89%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP K  +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
The following BLAST results are available for this feature:
BLAST of EY649989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RK23_WHEAT3.402e-2665.9650S ribosomal protein L23, chloroplastic OS=Tritic... [more]
RK23_ORYSJ3.402e-2665.9650S ribosomal protein L23, chloroplastic OS=Oryza ... [more]
RK23_ORYSI3.402e-2665.9650S ribosomal protein L23, chloroplastic OS=Oryza ... [more]
RK23_ORYSA3.402e-2665.9650S ribosomal protein L23, chloroplastic OS=Oryza ... [more]
RK23_ORYNI3.402e-2665.9650S ribosomal protein L23, chloroplastic OS=Oryza ... [more]
RK23_JASNU3.402e-2669.8950S ribosomal protein L23, chloroplastic OS=Jasmin... [more]
RK23_OENEH4.443e-2668.8250S ribosomal protein L23, chloroplastic OS=Oenoth... [more]
RK23_NANDO4.443e-2669.8950S ribosomal protein L23, chloroplastic OS=Nandin... [more]
RK23_TOBAC5.802e-2669.8950S ribosomal protein L23, chloroplastic OS=Nicoti... [more]
RK23_SOLTU5.802e-2669.8950S ribosomal protein L23, chloroplastic OS=Solanu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649989 ID=EY649989; Name=EY649989; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGCCCACGCGTCCGGGTTAAAGCGCCCAACTCATAATTGGC
GAATTCGTAGGTTCAATTCCTACTGGATGCACGCCAATGGGACCCTCCAA
TAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCATCTATACA
TAACGAATTGGTGTGGTATATTCATATCATAACATATGAACAGTAAGAAC
TAGCATTCTTATTGAGACTCGAACTCATAGGGAAGAAAATCGATTTATGG
ATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGA
AAAAATCAATATACTTTTAATGTCGAATCAGGATTAACTANGACAGAAAT
AAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGGTATNGCTATGAATA
GTCATCAACTTCCCCGAAAGGGTANNAAGATGGGGACCTATNATGGCACA
TACCATGCATTACAGACGTATGATCATTTACGCTCACCGGGGTATTCTAT
TNCANNCTCTANAAAGAAAAGAAACTGAATCAAATACTAATAGCATGGCG
ATACATTTATACCAAACTTCTACCCCGAGCACACGCATGGAGCCCGAGAC
AGTCAAGTGAAATCCAATCACGAAATAATTTGATCTATGACAGCATCGTT
GTGGGAAAAGTCGTAATGCCAGAGAATCATACCGCAGGCATAGAGGGGGN
AGTCATAAGCGTCTATACGTAAATCGATTTCGACGGATGAAAAGACTATA
TGGTAGATCGTACCATAGATACGACCCTATCGAATGCTACATTTGCTATC
CTTGGGGGATGGGGAGAGAGATTATTTACTCCCANAGGGCTATATGAATA
CCATGT
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