EY649989

Overview
NameEY649989
Unique NameEY649989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_SOLLC (50S ribosomal protein L23, chloroplastic OS=Solanum lycopersicum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.802e-26
Identity = 65/93 (69.89%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP K  +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_SOLBU (50S ribosomal protein L23, chloroplastic OS=Solanum bulbocastanum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.802e-26
Identity = 65/93 (69.89%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP K  +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_NICTO (50S ribosomal protein L23, chloroplastic OS=Nicotiana tomentosiformis GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.802e-26
Identity = 65/93 (69.89%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP K  +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_NICSY (50S ribosomal protein L23, chloroplastic OS=Nicotiana sylvestris GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.802e-26
Identity = 65/93 (69.89%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP K  +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_ATRBE (50S ribosomal protein L23, chloroplastic OS=Atropa belladonna GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.802e-26
Identity = 65/93 (69.89%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP K  +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_SACOF (50S ribosomal protein L23, chloroplastic OS=Saccharum officinarum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.578e-26
Identity = 62/94 (65.96%), Postives = 71/94 (75.53%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKRN 525
            MDGIKYAVFT+KS+RLLGKNQYTFNVESG T TEIKHWVELFFGVK  A+NSH+LP KG +MG   G T H  +    L+ PGYSI    ++ N
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQ-PGYSIPLLDRETN 93          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_SACHY (50S ribosomal protein L23, chloroplastic OS=Saccharum hybrid GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.578e-26
Identity = 62/94 (65.96%), Postives = 71/94 (75.53%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKRN 525
            MDGIKYAVFT+KS+RLLGKNQYTFNVESG T TEIKHWVELFFGVK  A+NSH+LP KG +MG   G T H  +    L+ PGYSI    ++ N
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQ-PGYSIPLLDRETN 93          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_MAIZE (50S ribosomal protein L23, chloroplastic OS=Zea mays GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.578e-26
Identity = 62/94 (65.96%), Postives = 71/94 (75.53%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKRN 525
            MDGIKYAVFT+KS+RLLGKNQYTFNVESG T TEIKHWVELFFGVK  A+NSH+LP KG +MG   G T H  +    L+ PGYSI    ++ N
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQ-PGYSIPLLDRETN 93          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23B_SORBI (50S ribosomal protein L23-B, chloroplastic OS=Sorghum bicolor GN=rpl23-B PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.578e-26
Identity = 62/94 (65.96%), Postives = 71/94 (75.53%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKRN 525
            MDGIKYAVFT+KS+RLLGKNQYTFNVESG T TEIKHWVELFFGVK  A+NSH+LP KG +MG   G T H  +    L+ PGYSI    ++ N
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQ-PGYSIPLLDRETN 93          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_PRUPE (50S ribosomal protein L23, chloroplastic OS=Prunus persica GN=rpl23 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.898e-26
Identity = 64/93 (68.82%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSIRLLGKNQYT NVESG T TEIKHW ELFFGVK  AMNSH+LP +G +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWFELFFGVKVIAMNSHRLPGRGRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
The following BLAST results are available for this feature:
BLAST of EY649989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RK23_SOLLC5.802e-2669.8950S ribosomal protein L23, chloroplastic OS=Solanu... [more]
RK23_SOLBU5.802e-2669.8950S ribosomal protein L23, chloroplastic OS=Solanu... [more]
RK23_NICTO5.802e-2669.8950S ribosomal protein L23, chloroplastic OS=Nicoti... [more]
RK23_NICSY5.802e-2669.8950S ribosomal protein L23, chloroplastic OS=Nicoti... [more]
RK23_ATRBE5.802e-2669.8950S ribosomal protein L23, chloroplastic OS=Atropa... [more]
RK23_SACOF7.578e-2665.9650S ribosomal protein L23, chloroplastic OS=Saccha... [more]
RK23_SACHY7.578e-2665.9650S ribosomal protein L23, chloroplastic OS=Saccha... [more]
RK23_MAIZE7.578e-2665.9650S ribosomal protein L23, chloroplastic OS=Zea ma... [more]
RK23B_SORBI7.578e-2665.9650S ribosomal protein L23-B, chloroplastic OS=Sorg... [more]
RK23_PRUPE9.898e-2668.8250S ribosomal protein L23, chloroplastic OS=Prunus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649989 ID=EY649989; Name=EY649989; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGCCCACGCGTCCGGGTTAAAGCGCCCAACTCATAATTGGC
GAATTCGTAGGTTCAATTCCTACTGGATGCACGCCAATGGGACCCTCCAA
TAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCATCTATACA
TAACGAATTGGTGTGGTATATTCATATCATAACATATGAACAGTAAGAAC
TAGCATTCTTATTGAGACTCGAACTCATAGGGAAGAAAATCGATTTATGG
ATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGA
AAAAATCAATATACTTTTAATGTCGAATCAGGATTAACTANGACAGAAAT
AAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGGTATNGCTATGAATA
GTCATCAACTTCCCCGAAAGGGTANNAAGATGGGGACCTATNATGGCACA
TACCATGCATTACAGACGTATGATCATTTACGCTCACCGGGGTATTCTAT
TNCANNCTCTANAAAGAAAAGAAACTGAATCAAATACTAATAGCATGGCG
ATACATTTATACCAAACTTCTACCCCGAGCACACGCATGGAGCCCGAGAC
AGTCAAGTGAAATCCAATCACGAAATAATTTGATCTATGACAGCATCGTT
GTGGGAAAAGTCGTAATGCCAGAGAATCATACCGCAGGCATAGAGGGGGN
AGTCATAAGCGTCTATACGTAAATCGATTTCGACGGATGAAAAGACTATA
TGGTAGATCGTACCATAGATACGACCCTATCGAATGCTACATTTGCTATC
CTTGGGGGATGGGGAGAGAGATTATTTACTCCCANAGGGCTATATGAATA
CCATGT
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