EY649989

Overview
NameEY649989
Unique NameEY649989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_HORVU (50S ribosomal protein L23, chloroplastic OS=Hordeum vulgare GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.898e-26
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKRN 525
            MDGIKYAVFT+KS+RLLGKNQYTFNVESG T TEIKHWVELFFGVK  A+NSH+LP KG ++G   G T H  +    L+ PGYSI    +++N
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRIGPILGHTMHYRRMIITLQ-PGYSIPLLDREKN 93          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23B_AGRST (50S ribosomal protein L23-B, chloroplastic OS=Agrostis stolonifera GN=rpl23-B PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.898e-26
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKRN 525
            MDGIKYAVFT+KS+RLLGKNQYTFNVESG T TEIKHWVELFFGVK  A+NSH+LP KG ++G   G T H  +    L+ PGYSI    +++N
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRIGPILGHTMHYRRMIITLQ-PGYSIPLLDREKN 93          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_PLAOC (50S ribosomal protein L23, chloroplastic OS=Platanus occidentalis GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.293e-25
Identity = 64/93 (68.82%), Postives = 68/93 (73.12%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDK IRLLG NQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVFTDKGIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_PHAAO (50S ribosomal protein L23, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.761e-25
Identity = 63/93 (67.74%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFT+KSIRLLG NQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGYSI    +KR
Sbjct:    1 MDGIKYAVFTEKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLIEKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_LOTJA (50S ribosomal protein L23, chloroplastic OS=Lotus japonicus GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.761e-25
Identity = 64/93 (68.82%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            M+GIKYAVFTDKSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG K+    G T H  +    L+ PGYSI    KKR
Sbjct:    1 MNGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVKAMNSHRLPAKGRKVRLIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_DRIGR (50S ribosomal protein L23, chloroplastic OS=Drimys granadensis GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.761e-25
Identity = 63/93 (67.74%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFT+KSIRLLG NQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGYSI    +KR
Sbjct:    1 MDGIKYAVFTEKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLIEKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_PHAAN (50S ribosomal protein L23, chloroplastic OS=Phaseolus angularis GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.094e-24
Identity = 63/93 (67.74%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            M+GIKYAVFTDKSIRLLGKNQYTFNVESG T TEIKHWVELFF VK  AMNSH+LP KG ++    G T H  +    L+ PGYSI    KKR
Sbjct:    1 MNGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFDVKVIAMNSHRLPVKGRRVRPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_ACOCL (50S ribosomal protein L23, chloroplastic OS=Acorus calamus GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.094e-24
Identity = 62/93 (66.67%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFT+KSIRLLG NQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG ++G   G T H  +    L+ PGYSI    +KR
Sbjct:    1 MDGIKYAVFTEKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRVGPIKGHTMHYRRMIITLQ-PGYSIPPLIEKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23A_AGRST (50S ribosomal protein L23-A, chloroplastic OS=Agrostis stolonifera GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.094e-24
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 1
Query:  250 DGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXGTYHALQTYDHLRSPGYSIXXSXKKRN 525
            +GIKYAVFT+KS+RLLGKNQYTFNVESG T TEIKHWVELFFGVK  A+NSH+LP KG ++G   G     +    +  PGYSI    +++N
Sbjct:    3 NGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRIGPILGHTMHYRRMIIILQPGYSIPLLDREKN 94          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_HELAN (50S ribosomal protein L23, chloroplastic OS=Helianthus annuus GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.429e-24
Identity = 63/93 (67.74%), Postives = 68/93 (73.12%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGI+YAVFTDKSIRLLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+L  K  +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIRYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLRGKARRMGPIMGQTMHYRRMIITLQ-PGYSIPPLRKKR 92          
The following BLAST results are available for this feature:
BLAST of EY649989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RK23_HORVU9.898e-2664.8950S ribosomal protein L23, chloroplastic OS=Hordeu... [more]
RK23B_AGRST9.898e-2664.8950S ribosomal protein L23-B, chloroplastic OS=Agro... [more]
RK23_PLAOC1.293e-2568.8250S ribosomal protein L23, chloroplastic OS=Platan... [more]
RK23_PHAAO3.761e-2567.7450S ribosomal protein L23, chloroplastic OS=Phalae... [more]
RK23_LOTJA3.761e-2568.8250S ribosomal protein L23, chloroplastic OS=Lotus ... [more]
RK23_DRIGR3.761e-2567.7450S ribosomal protein L23, chloroplastic OS=Drimys... [more]
RK23_PHAAN1.094e-2467.7450S ribosomal protein L23, chloroplastic OS=Phaseo... [more]
RK23_ACOCL1.094e-2466.6750S ribosomal protein L23, chloroplastic OS=Acorus... [more]
RK23A_AGRST1.094e-2460.8750S ribosomal protein L23-A, chloroplastic OS=Agro... [more]
RK23_HELAN1.429e-2467.7450S ribosomal protein L23, chloroplastic OS=Helian... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649989 ID=EY649989; Name=EY649989; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGCCCACGCGTCCGGGTTAAAGCGCCCAACTCATAATTGGC
GAATTCGTAGGTTCAATTCCTACTGGATGCACGCCAATGGGACCCTCCAA
TAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCATCTATACA
TAACGAATTGGTGTGGTATATTCATATCATAACATATGAACAGTAAGAAC
TAGCATTCTTATTGAGACTCGAACTCATAGGGAAGAAAATCGATTTATGG
ATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGA
AAAAATCAATATACTTTTAATGTCGAATCAGGATTAACTANGACAGAAAT
AAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGGTATNGCTATGAATA
GTCATCAACTTCCCCGAAAGGGTANNAAGATGGGGACCTATNATGGCACA
TACCATGCATTACAGACGTATGATCATTTACGCTCACCGGGGTATTCTAT
TNCANNCTCTANAAAGAAAAGAAACTGAATCAAATACTAATAGCATGGCG
ATACATTTATACCAAACTTCTACCCCGAGCACACGCATGGAGCCCGAGAC
AGTCAAGTGAAATCCAATCACGAAATAATTTGATCTATGACAGCATCGTT
GTGGGAAAAGTCGTAATGCCAGAGAATCATACCGCAGGCATAGAGGGGGN
AGTCATAAGCGTCTATACGTAAATCGATTTCGACGGATGAAAAGACTATA
TGGTAGATCGTACCATAGATACGACCCTATCGAATGCTACATTTGCTATC
CTTGGGGGATGGGGAGAGAGATTATTTACTCCCANAGGGCTATATGAATA
CCATGT
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