EY649989

Overview
NameEY649989
Unique NameEY649989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_SOYBN (50S ribosomal protein L23, chloroplastic OS=Glycine max GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.438e-24
Identity = 62/93 (66.67%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            M+GIKYAVFTDKSIRLLGKNQYTFNVESG T TEIKHWVELFF VK  AMNSH+LP KG ++    G T H  +    L+ PGYSI    KK+
Sbjct:    1 MNGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFDVKVIAMNSHRLPVKGRRVRPIMGHTMHYRRMIITLQ-PGYSIPPLRKKK 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_CALFG (50S ribosomal protein L23, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.438e-24
Identity = 62/92 (67.39%), Postives = 68/92 (73.91%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXGTYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFT+KSIRLLG NQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG    T H  +    L+ PGYSI    +KR
Sbjct:    1 MDGIKYAVFTEKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMG---HTMHYRRMIITLQ-PGYSIPPLIEKR 88          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_NYMAL (50S ribosomal protein L23, chloroplastic OS=Nymphaea alba GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.158e-24
Identity = 61/93 (65.59%), Postives = 68/93 (73.12%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMG-TYXGTYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFT+KSIRLLG NQYT NVESG T TEIKHW+ELFFGVK  AMNSH+LP KG +MG     T H  +    L+ PGYSI    +KR
Sbjct:    1 MDGIKYAVFTEKSIRLLGNNQYTSNVESGSTRTEIKHWIELFFGVKVVAMNSHRLPGKGRRMGPIMRHTMHYRRMIITLQ-PGYSIPPLIEKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_LACSA (50S ribosomal protein L23, chloroplastic OS=Lactuca sativa GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.158e-24
Identity = 62/93 (66.67%), Postives = 68/93 (73.12%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGI+YAVFTDKSI+LLGKNQYT NVESG T TEIKHWVELFFGVK  AMNSH+L  K  +MG   G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIRYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLRGKARRMGPIMGQTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_POPAL (50S ribosomal protein L23, chloroplastic OS=Populus alba GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.264e-24
Identity = 63/93 (67.74%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAV TDKSIRLL KNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +M    G T H  +    L+ PGYSI    KKR
Sbjct:    1 MDGIKYAVVTDKSIRLLLKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIMGHTMHYRRMIITLQ-PGYSIPPLRKKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_PIPCE (50S ribosomal protein L23, chloroplastic OS=Piper cenocladum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.210e-23
Identity = 61/93 (65.59%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKY VFT+KSIRLLG NQYT NVESG T TEIKHWVELFFGVK  AMNSH+L  KG +MG   G T H  +    L+ PGYSI    +KR
Sbjct:    1 MDGIKYIVFTEKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLQGKGRRMGPIIGHTMHYRRMIITLQ-PGYSIPPLIEKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_LIRTU (50S ribosomal protein L23, chloroplastic OS=Liriodendron tulipifera GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.210e-23
Identity = 61/93 (65.59%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKY VFT+KSIRLL  NQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGYSI    +KR
Sbjct:    1 MDGIKYEVFTEKSIRLLENNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGIRMGPIMGHTMHYRRMIITLQ-PGYSILTLIQKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_GOSHI (50S ribosomal protein L23, chloroplastic OS=Gossypium hirsutum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.210e-23
Identity = 62/93 (66.67%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKY V TDKSIRLL KNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGYSI     KR
Sbjct:    1 MDGIKYVVVTDKSIRLLVKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRTKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_GOSBA (50S ribosomal protein L23, chloroplastic OS=Gossypium barbadense GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.210e-23
Identity = 62/93 (66.67%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKY V TDKSIRLL KNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGYSI     KR
Sbjct:    1 MDGIKYVVVTDKSIRLLVKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ-PGYSIPPLRTKR 92          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23A_SORBI (50S ribosomal protein L23-A, chloroplastic OS=Sorghum bicolor GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.598e-23
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 1
Query:  250 DGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG 447
            +GIKYAVFT+KS+RLLGKNQYTFNVESG T TEIKHWVELFFGVK  A+NSH+LP KG +MG   G
Sbjct:    3 NGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILG 68          
The following BLAST results are available for this feature:
BLAST of EY649989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RK23_SOYBN2.438e-2466.6750S ribosomal protein L23, chloroplastic OS=Glycin... [more]
RK23_CALFG2.438e-2467.3950S ribosomal protein L23, chloroplastic OS=Calyca... [more]
RK23_NYMAL4.158e-2465.5950S ribosomal protein L23, chloroplastic OS=Nympha... [more]
RK23_LACSA4.158e-2466.6750S ribosomal protein L23, chloroplastic OS=Lactuc... [more]
RK23_POPAL9.264e-2467.7450S ribosomal protein L23, chloroplastic OS=Populu... [more]
RK23_PIPCE1.210e-2365.5950S ribosomal protein L23, chloroplastic OS=Piper ... [more]
RK23_LIRTU1.210e-2365.5950S ribosomal protein L23, chloroplastic OS=Liriod... [more]
RK23_GOSHI1.210e-2366.6750S ribosomal protein L23, chloroplastic OS=Gossyp... [more]
RK23_GOSBA1.210e-2366.6750S ribosomal protein L23, chloroplastic OS=Gossyp... [more]
RK23A_SORBI4.598e-2377.2750S ribosomal protein L23-A, chloroplastic OS=Sorg... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649989 ID=EY649989; Name=EY649989; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGCCCACGCGTCCGGGTTAAAGCGCCCAACTCATAATTGGC
GAATTCGTAGGTTCAATTCCTACTGGATGCACGCCAATGGGACCCTCCAA
TAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCATCTATACA
TAACGAATTGGTGTGGTATATTCATATCATAACATATGAACAGTAAGAAC
TAGCATTCTTATTGAGACTCGAACTCATAGGGAAGAAAATCGATTTATGG
ATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGA
AAAAATCAATATACTTTTAATGTCGAATCAGGATTAACTANGACAGAAAT
AAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGGTATNGCTATGAATA
GTCATCAACTTCCCCGAAAGGGTANNAAGATGGGGACCTATNATGGCACA
TACCATGCATTACAGACGTATGATCATTTACGCTCACCGGGGTATTCTAT
TNCANNCTCTANAAAGAAAAGAAACTGAATCAAATACTAATAGCATGGCG
ATACATTTATACCAAACTTCTACCCCGAGCACACGCATGGAGCCCGAGAC
AGTCAAGTGAAATCCAATCACGAAATAATTTGATCTATGACAGCATCGTT
GTGGGAAAAGTCGTAATGCCAGAGAATCATACCGCAGGCATAGAGGGGGN
AGTCATAAGCGTCTATACGTAAATCGATTTCGACGGATGAAAAGACTATA
TGGTAGATCGTACCATAGATACGACCCTATCGAATGCTACATTTGCTATC
CTTGGGGGATGGGGAGAGAGATTATTTACTCCCANAGGGCTATATGAATA
CCATGT
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