EY649989

Overview
NameEY649989
Unique NameEY649989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_MORIN (50S ribosomal protein L23, chloroplastic OS=Morus indica GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.024e-22
Identity = 61/92 (66.30%), Postives = 65/92 (70.65%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKK 519
            MDGIKY V TDKSIRLL KNQYT NVESG T TEIKHWVELFFGVK  AMNSH+LP KG +MG   G T H  +    L+ PGY I    KK
Sbjct:    1 MDGIKYFVVTDKSIRLLLKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQ-PGYYIPPLIKK 91          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_AMBTC (50S ribosomal protein L23, chloroplastic OS=Amborella trichopoda GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.024e-22
Identity = 58/94 (61.70%), Postives = 64/94 (68.09%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQL--PRKGXKMGTYXGTYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFT+KSIRLLG NQYT NVESG T  EIKHW+ELFFGVK  AMNSH+L  P KG +MG   G     +       PGYSI    +KR
Sbjct:    1 MDGIKYAVFTEKSIRLLGNNQYTSNVESGSTRAEIKHWIELFFGVKVIAMNSHRLPVPGKGRRMGPLMGHRMHYRRMIITLQPGYSIPPLIEKR 94          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_PELHO (50S ribosomal protein L23, chloroplastic OS=Pelargonium hortorum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.479e-21
Identity = 57/85 (67.06%), Postives = 63/85 (74.12%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXGTYHALQTYDHLRSPGYSI 501
            MDGIKYAV TDKS+RL+ KNQYTFNVESG T TEIK WVELFFGVK  AMNSH+LP K  +MG    T H  +    L+ PGYSI
Sbjct:    1 MDGIKYAVVTDKSLRLVSKNQYTFNVESGSTRTEIKSWVELFFGVKVIAMNSHRLPGKRRRMG---HTMHYRRMIITLQ-PGYSI 81          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK232_SPIOL (Putative 50S ribosomal protein L23, chloroplastic OS=Spinacia oleracea GN=rpl23 PE=5 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.172e-18
Identity = 56/93 (60.22%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSIXXSXKKR 522
            MDGIKYAVFTDKSI+LLGK QYT NVES  T TEIKHWVEL+       MNSH+LP KG +MG   G T H  +    L+S  YSI    KKR
Sbjct:    1 MDGIKYAVFTDKSIQLLGKKQYTSNVESRSTRTEIKHWVELW---NSYEMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQS-SYSIPPLRKKR 89          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_PICAB (50S ribosomal protein L23, chloroplastic OS=Picea abies GN=rpl23 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.702e-15
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG 447
            MD +KY V T+KSIRLL +NQYTFNV+S L  T++K W+E FF VK  AMNS++LP KG K G+  G
Sbjct:    1 MDEVKYPVLTEKSIRLLERNQYTFNVDSQLNKTKMKIWIEHFFDVKVIAMNSYRLPEKGGKGGSMIG 67          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_PINKO (50S ribosomal protein L23, chloroplastic OS=Pinus koraiensis GN=rpl23 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.110e-14
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGT 438
            MD +KY V T+KSIRLL +NQYTFNV+     T+IK+W+E FF VK  AMNS++LP KG K G+
Sbjct:    1 MDEVKYPVLTEKSIRLLERNQYTFNVDLQSNKTKIKNWIENFFDVKVIAMNSYRLPEKGGKRGS 64          

HSP 2 Score: 20.7866 bits (42), Expect = 1.110e-14
Identity = 9/27 (33.33%), Postives = 14/27 (51.85%), Query Frame = 2
Query:  413 PERVXRWGPXMAHTMHYRRMIIYAHRG 493
            PE+  + G  + H +  +RMII    G
Sbjct:   56 PEKGGKRGSMIVHPIRCKRMIITLRTG 82          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_PINTH (50S ribosomal protein L23, chloroplastic OS=Pinus thunbergii GN=rpl23 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.341e-14
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG 447
            MD +KY V T+KSIRLL +NQYTFNV+S    T+IK+W+E FF VK  AMNS++LP KG K  +  G
Sbjct:    1 MDEVKYPVLTEKSIRLLERNQYTFNVDSQSNKTKIKNWIENFFDVKVIAMNSYRLPEKGGKRVSMIG 67          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_MARPO (50S ribosomal protein L23, chloroplastic OS=Marchantia polymorpha GN=rpl23 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG-TYHALQTYDHLRSPGYSI 501
            M+ +KY V T+K+IRLL KNQY+F+V      T+IK W+ELFF VK  ++NSH+LP+K  K+GT  G T    +    L+S GYSI
Sbjct:    1 MNQVKYPVLTEKTIRLLEKNQYSFDVNIDSNKTQIKKWIELFFNVKVISVNSHRLPKKKKKIGTTTGYTVRYKRMIIKLQS-GYSI 85          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_PHYPA (50S ribosomal protein L23, chloroplastic OS=Physcomitrella patens GN=rpl23 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 40/85 (47.06%), Postives = 49/85 (57.65%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXGTYHALQTYDHLRSPGYSI 501
            MD IKY V T+K+IRLL KNQYTF+V    T  +IK W+E FF VK  A+NSH  P K  ++G   G     +        GYSI
Sbjct:    1 MDEIKYPVLTEKTIRLLEKNQYTFDVNKKSTKPQIKKWIENFFNVKVKAINSHIPPEKKKRIGPIIGHSVRYKRMIITLKTGYSI 85          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_ANTFO (50S ribosomal protein L23, chloroplastic OS=Anthoceros formosae GN=rpl23 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG 447
            MD +KY V T+K+IRLL +NQY F+V+   + TEIK W++ FF VK  AMNSH+ P+K  ++G   G
Sbjct:    1 MDKVKYPVLTEKTIRLLERNQYCFDVDLKASKTEIKQWIQDFFKVKVVAMNSHRPPKKKKRIGPVLG 67          
The following BLAST results are available for this feature:
BLAST of EY649989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RK23_MORIN1.024e-2266.3050S ribosomal protein L23, chloroplastic OS=Morus ... [more]
RK23_AMBTC1.024e-2261.7050S ribosomal protein L23, chloroplastic OS=Ambore... [more]
RK23_PELHO1.479e-2167.0650S ribosomal protein L23, chloroplastic OS=Pelarg... [more]
RK232_SPIOL1.172e-1860.22Putative 50S ribosomal protein L23, chloroplastic ... [more]
RK23_PICAB2.702e-1559.7050S ribosomal protein L23, chloroplastic OS=Picea ... [more]
RK23_PINKO1.110e-1459.3850S ribosomal protein L23, chloroplastic OS=Pinus ... [more]
RK23_PINTH1.341e-1458.2150S ribosomal protein L23, chloroplastic OS=Pinus ... [more]
RK23_MARPO6.654e-1450.0050S ribosomal protein L23, chloroplastic OS=Marcha... [more]
RK23_PHYPA3.651e-1247.0650S ribosomal protein L23, chloroplastic OS=Physco... [more]
RK23_ANTFO3.651e-1250.7550S ribosomal protein L23, chloroplastic OS=Anthoc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649989 ID=EY649989; Name=EY649989; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGCCCACGCGTCCGGGTTAAAGCGCCCAACTCATAATTGGC
GAATTCGTAGGTTCAATTCCTACTGGATGCACGCCAATGGGACCCTCCAA
TAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCATCTATACA
TAACGAATTGGTGTGGTATATTCATATCATAACATATGAACAGTAAGAAC
TAGCATTCTTATTGAGACTCGAACTCATAGGGAAGAAAATCGATTTATGG
ATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGA
AAAAATCAATATACTTTTAATGTCGAATCAGGATTAACTANGACAGAAAT
AAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGGTATNGCTATGAATA
GTCATCAACTTCCCCGAAAGGGTANNAAGATGGGGACCTATNATGGCACA
TACCATGCATTACAGACGTATGATCATTTACGCTCACCGGGGTATTCTAT
TNCANNCTCTANAAAGAAAAGAAACTGAATCAAATACTAATAGCATGGCG
ATACATTTATACCAAACTTCTACCCCGAGCACACGCATGGAGCCCGAGAC
AGTCAAGTGAAATCCAATCACGAAATAATTTGATCTATGACAGCATCGTT
GTGGGAAAAGTCGTAATGCCAGAGAATCATACCGCAGGCATAGAGGGGGN
AGTCATAAGCGTCTATACGTAAATCGATTTCGACGGATGAAAAGACTATA
TGGTAGATCGTACCATAGATACGACCCTATCGAATGCTACATTTGCTATC
CTTGGGGGATGGGGAGAGAGATTATTTACTCCCANAGGGCTATATGAATA
CCATGT
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