EY649989

Overview
NameEY649989
Unique NameEY649989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_STAPU (50S ribosomal protein L23, chloroplastic OS=Staurastrum punctulatum GN=rpl23 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG 447
            +D IK  V   K IRLL KNQYTF+V+   T T++K+WVE FFGVK   MNSH+ PRK  +MG   G
Sbjct:    2 IDYIKSPVLKFKLIRLLEKNQYTFDVDPKATKTDVKYWVENFFGVKVIGMNSHRPPRKMKRMGPTIG 68          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_SPIMX (50S ribosomal protein L23, chloroplastic OS=Spirogyra maxima GN=rpl23 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.367e-11
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG 447
            MD IKY     K+IRLL + QYTF+V+   T TE+K W+E FF VK   MNSH+ P+K  +MG+  G
Sbjct:    1 MDKIKYRPIGMKAIRLLERRQYTFDVDVKATKTEVKRWIEGFFSVKVVGMNSHRPPKKKKRMGSVIG 67          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_PSINU (50S ribosomal protein L23, chloroplastic OS=Psilotum nudum GN=rpl23 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.367e-11
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRK 420
            M+ IK  + T+K+IRLL KNQYTFNV+S LT T+IK W+E FF VK  ++NS + PRK
Sbjct:    1 MNEIKNQIITEKTIRLLQKNQYTFNVDSKLTKTKIKDWIERFFDVKVKSINSLRSPRK 58          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK2_CARPA (50S ribosomal protein L2, chloroplastic OS=Carica papaya GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.091e-11
Identity = 53/110 (48.18%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  545 MAIHLYQTSTPSTRME--PETVK*NPITK*FDL*QHRCGKSRNARESY-RRHRGGSHKRLY--VNRFRRMKRLYGRSYH-RYDPIE----CYICYPWGMGREIIYSXRAI 844
            MAIHLY+TSTPSTR       VK NP        QHRCGK RNAR     RHRGG HKRLY  ++  R  K +YGR     YDP      C I Y  G  R I++   AI
Sbjct:    1 MAIHLYKTSTPSTRNRAVDSQVKSNPRNN-LIYGQHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAI 109          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK2_AETGR (50S ribosomal protein L2, chloroplastic OS=Aethionema grandiflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.091e-11
Identity = 53/110 (48.18%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  545 MAIHLYQTSTPSTR--MEPETVK*NPITK*FDL*QHRCGKSRNARESY-RRHRGGSHKRLY--VNRFRRMKRLYGRSYH-RYDPIE----CYICYPWGMGREIIYSXRAI 844
            MAIHLY+TSTPSTR       VK NP        QHRCGK RNAR     RHRGG HKRLY  ++  R  K +YGR     YDP      C I Y  G  R I++   AI
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNN-LIYGQHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAI 109          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK2_AETCO (50S ribosomal protein L2, chloroplastic OS=Aethionema cordifolium GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.091e-11
Identity = 53/110 (48.18%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  545 MAIHLYQTSTPSTR--MEPETVK*NPITK*FDL*QHRCGKSRNARESY-RRHRGGSHKRLY--VNRFRRMKRLYGRSYH-RYDPIE----CYICYPWGMGREIIYSXRAI 844
            MAIHLY+TSTPSTR       VK NP        QHRCGK RNAR     RHRGG HKRLY  ++  R  K +YGR     YDP      C I Y  G  R I++   AI
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNN-LIYGQHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAI 109          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK2_GOSBA (50S ribosomal protein L2, chloroplastic OS=Gossypium barbadense GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 52/110 (47.27%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  545 MAIHLYQTSTPSTR--MEPETVK*NPITK*FDL*QHRCGKSRNARESY-RRHRGGSHKRLY--VNRFRRMKRLYGRSYH-RYDPIE----CYICYPWGMGREIIYSXRAI 844
            MAIHLY+TSTP TR       VK NP        QHRCGK RNAR     RHRGG HKRLY  ++  R  K +YGR     YDP      C+I Y  G  R I++   AI
Sbjct:    1 MAIHLYKTSTPGTRNGAVDSQVKSNPRNN-LIYGQHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICFIHYGDGEKRYILHPRGAI 109          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_HUPLU (50S ribosomal protein L23, chloroplastic OS=Huperzia lucidula GN=rpl23 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXGTYHALQTYDHLRSPGYSI 501
            MD +K  V T+K+IRLL K QY+F+V+     TE+KHW+E FF V+  AMNSH+ P K    G+        +       PGYSI
Sbjct:    1 MDKVKKPVLTEKTIRLLEKKQYSFDVDLKSNKTEVKHWIEKFFNVEVRAMNSHRPPGKKKYAGSIVTHSVRYKRMIITLKPGYSI 85          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK23_CHAGL (50S ribosomal protein L23, chloroplastic OS=Chaetosphaeridium globosum GN=rpl23 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  247 MDGIKYAVFTDKSIRLLGKNQYTFNVESGLTXTEIKHWVELFFGVKGXAMNSHQLPRKGXKMGTYXG 447
            +D +K  + T+KSIRLL KNQYTF V S +  TE K W+E+FF VK  ++NS + PRK  ++G   G
Sbjct:    2 IDKVKSPLLTEKSIRLLQKNQYTFQVNSDVNKTEFKKWIEIFFKVKVMSINSCRPPRKKKRIGLISG 68          
BLAST of EY649989 vs. ExPASy Swiss-Prot
Match: RK2_PHAAN (50S ribosomal protein L2, chloroplastic OS=Phaseolus angularis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 51/111 (45.95%), Postives = 60/111 (54.05%), Query Frame = 2
Query:  545 MAIHLYQTSTPSTR---MEPETVK*NPITK*FDL*QHRCGKSRNARESYRR-HRGGSHKRLY--VNRFRRMKRLYGRSYH-RYDPIE----CYICYPWGMGREIIYSXRAI 844
            MAIHLY+TSTPSTR   ++   VK NP        QHRCGK RNAR      HRGG HKRLY  ++  R  K +YGR     YDP      C I Y  G  + I++   AI
Sbjct:    1 MAIHLYKTSTPSTRNGTVDSRQVKSNPRNH-LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRQIDFRRNEKNIYGRIVTIEYDPNRNASICLIHYGDGEKKYILHPRGAI 110          
The following BLAST results are available for this feature:
BLAST of EY649989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RK23_STAPU4.769e-1255.2250S ribosomal protein L23, chloroplastic OS=Staura... [more]
RK23_SPIMX2.367e-1150.7550S ribosomal protein L23, chloroplastic OS=Spirog... [more]
RK23_PSINU2.367e-1158.6250S ribosomal protein L23, chloroplastic OS=Psilot... [more]
RK2_CARPA3.091e-1148.1850S ribosomal protein L2, chloroplastic OS=Carica ... [more]
RK2_AETGR3.091e-1148.1850S ribosomal protein L2, chloroplastic OS=Aethion... [more]
RK2_AETCO3.091e-1148.1850S ribosomal protein L2, chloroplastic OS=Aethion... [more]
RK2_GOSBA4.037e-1147.2750S ribosomal protein L2, chloroplastic OS=Gossypi... [more]
RK23_HUPLU4.037e-1143.5350S ribosomal protein L23, chloroplastic OS=Huperz... [more]
RK23_CHAGL5.273e-1149.2550S ribosomal protein L23, chloroplastic OS=Chaeto... [more]
RK2_PHAAN8.994e-1145.9550S ribosomal protein L2, chloroplastic OS=Phaseol... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649989 ID=EY649989; Name=EY649989; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGCCCACGCGTCCGGGTTAAAGCGCCCAACTCATAATTGGC
GAATTCGTAGGTTCAATTCCTACTGGATGCACGCCAATGGGACCCTCCAA
TAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCATCTATACA
TAACGAATTGGTGTGGTATATTCATATCATAACATATGAACAGTAAGAAC
TAGCATTCTTATTGAGACTCGAACTCATAGGGAAGAAAATCGATTTATGG
ATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGA
AAAAATCAATATACTTTTAATGTCGAATCAGGATTAACTANGACAGAAAT
AAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGGTATNGCTATGAATA
GTCATCAACTTCCCCGAAAGGGTANNAAGATGGGGACCTATNATGGCACA
TACCATGCATTACAGACGTATGATCATTTACGCTCACCGGGGTATTCTAT
TNCANNCTCTANAAAGAAAAGAAACTGAATCAAATACTAATAGCATGGCG
ATACATTTATACCAAACTTCTACCCCGAGCACACGCATGGAGCCCGAGAC
AGTCAAGTGAAATCCAATCACGAAATAATTTGATCTATGACAGCATCGTT
GTGGGAAAAGTCGTAATGCCAGAGAATCATACCGCAGGCATAGAGGGGGN
AGTCATAAGCGTCTATACGTAAATCGATTTCGACGGATGAAAAGACTATA
TGGTAGATCGTACCATAGATACGACCCTATCGAATGCTACATTTGCTATC
CTTGGGGGATGGGGAGAGAGATTATTTACTCCCANAGGGCTATATGAATA
CCATGT
back to top