EY649832

Overview
NameEY649832
Unique NameEY649832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649832 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.218e-71
Identity = 129/181 (71.27%), Postives = 149/181 (82.32%), Query Frame = 3
Query:   30 MASSMISSATVATANRASL--AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 566
            MASSM+S+A  A A  A+   AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+  GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD   VL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KP
Sbjct:    1 MASSMMSNAATAVAVAATSGGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180          
BLAST of EY649832 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.489e-71
Identity = 125/179 (69.83%), Postives = 149/179 (83.24%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 566
            MASS++S+A    A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM VWPP G+KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD + V+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177          
BLAST of EY649832 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 7.169e-71
Identity = 124/176 (70.45%), Postives = 148/176 (84.09%), Query Frame = 3
Query:   39 SMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 566
            ++ISSA V T NRA + QA++  PFTGLKSS+ FP TKK NNDITSI SNG RV CM+VWPP G KKFETLSYLPPL+DE LLKE+ YL+R GW+PC+EFELEKG+V+R+++ SPGYYDGRYWTMW+LP++G TDA  VLKEV E + EYP +F+RIIGFDN RQVQCISFIA+ P
Sbjct:    2 ALISSAAVTTINRAPV-QANLATPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175          
BLAST of EY649832 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 9.363e-71
Identity = 120/174 (68.97%), Postives = 150/174 (86.21%), Query Frame = 3
Query:   51 SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 572
            S++VAT +R + AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP GLKK+ETLSYLPPL++  L KE++YL+R  W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+  V+KE+ E +KEYP +++RIIGFDN RQVQCI FIA++P G
Sbjct:    5 SSSVATVSRTAPAQANMVAPFTGLKSNAAFPTTKKAN-DFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177          
BLAST of EY649832 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.223e-70
Identity = 127/179 (70.95%), Postives = 149/179 (83.24%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 566
            MASSM++S   A   RA  AQ+SMVAPF GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+ V+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:    1 MASSMMAST--AAVARAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY649832 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.223e-70
Identity = 127/177 (71.75%), Postives = 148/177 (83.62%), Query Frame = 3
Query:   36 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 566
            +SM+S+A V    R + AQASMVAPFTGLKS SAFP TKK+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD + V+ E+ E +K YP +F RIIGFDN RQVQCISFIA KP
Sbjct:    2 ASMMSNAAVV--GRTTPAQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
BLAST of EY649832 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.597e-70
Identity = 122/174 (70.11%), Postives = 151/174 (86.78%), Query Frame = 3
Query:   51 SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 572
            S+TVAT +RA+ AQA+MVAPFTGLKS+ AFPATKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+  V+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNVAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177          
BLAST of EY649832 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.035e-69
Identity = 125/177 (70.62%), Postives = 150/177 (84.75%), Query Frame = 3
Query:   36 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 566
            +S++S+A V TA+ A  AQA+MVAPF+GLKS+SAFP ++K+N DITS+A+NGGRV CM+VWPP  LKKFETLSYLP LS+E+LLKEINYL+  GW+PCLEFE+    VYRE++KSPGYYDGRYWTMWKLPM+GCTDA+ V  EV E +  YP + VRIIGFDNKRQVQCISFIA KP
Sbjct:    2 ASLMSNAAVVTASTA--AQANMVAPFSGLKSTSAFPVSRKSNVDITSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY649832 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.035e-69
Identity = 125/179 (69.83%), Postives = 147/179 (82.12%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 566
            MASSM++S   A   R   AQ +MVAPF GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+ V+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:    1 MASSMMAST--AAVARVGPAQTNMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY649832 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.352e-69
Identity = 125/179 (69.83%), Postives = 149/179 (83.24%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATXVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 566
            MASS    ++VATA RA+ AQASMVAPF GLKS+SAFP T+K    ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA  V+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:    1 MASSATMLSSVATAARAAPAQASMVAPFVGLKSASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
The following BLAST results are available for this feature:
BLAST of EY649832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS2_AMAHP3.218e-7171.27Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS5_MESCR5.489e-7169.83Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_TRIRP7.169e-7170.45Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HELAN9.363e-7168.97Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_LEMGI1.223e-7070.95Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS2_MESCR1.223e-7071.75Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_FLAPR1.597e-7070.11Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_SILPR1.035e-6970.62Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_LEMGI1.035e-6969.83Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS3_FRIAG1.352e-6969.83Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-004-A09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649832 ID=EY649832; Name=EY649832; organism=Citrus sinensis; type=EST; length=816bp
TGCAAAGCTANAAGAAGGAGCAAGTACCAATGGCTTCCTCAATGATCTCA
TCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCAT
GGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCA
AGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTC
CAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCT
CTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAATT
ACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAA
GGATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACG
CTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCC
ANGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTC
GTCCGAATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTT
CATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAA
CCACCCATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGAT
CATTCGATCAATGGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGC
TGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTNCT
TTTTTTTTTTTTAATATATTNAAAATATTGAATCCCTTGGTTNACAGTTC
ATTAAAAAAAAAAAAA
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