EY649784

Overview
NameEY649784
Unique NameEY649784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 5.117e-79
Identity = 157/240 (65.42%), Postives = 177/240 (73.75%), Query Frame = 3
Query:   54 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSCSPWYGPDRFKYLGPFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            MA S +  ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS   PSYLTGEFPGDYGWDTAGLSADP TFA NRELEVIH  WAMLGALGCVFPE+L++NG  F EAVWFKA A IFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG V+GY + G PL E  D +YPG + DPLGLADDPD FAEL + K   NG     +MFGFF QA V G
Sbjct:    1 MAASALHQTTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQSI--WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKV-KELKNGRLAMFSMFGFFVQAIVTG 233          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 6.871e-79
Identity = 157/238 (65.97%), Postives = 174/238 (73.11%), Query Frame = 3
Query:   54 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSCSPWYGPDRFKYLGPFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            MA +TMA++S + VGK    A    ++   GRI+MRKT +K     S SPWYG DR  YLGP SG PPSYLTGEFPGDYGWDT GLSADP TFA NRELEVIHC WA+   LGCVFPELLARNG  F E VWFKA + IFSEGGL + GNPSL+HAQSILAIWACQVVLMGAV+GY +AG  L EV DPLY G S DPLGL DDP+ FAEL + K   NG     +MFGFF QA V G
Sbjct:    1 MAAATMAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 234          

HSP 2 Score: 22.7126 bits (47), Expect = 6.871e-79
Identity = 11/25 (44.00%), Postives = 14/25 (56.00%), Query Frame = 1
Query:  760 VGDLADHLADPA-IQCLGYATHLCP 831
            + +LADHL DP       YAT+  P
Sbjct:  238 IENLADHLTDPVNNNAWAYATNFVP 262          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.489e-78
Identity = 158/241 (65.56%), Postives = 177/241 (73.44%), Query Frame = 3
Query:   54 MATSTMALSSSFVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSCSPWYGPDRFKYLGPFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            MAT  +   S+FVG+AV    S NE          GRI+MR+T   +  S   WYG DR KYLGPFS   PSYLTGEFPGDYGWDTAGLSADP TFA NRELEVIHC WAMLGALGCVFPE+L++NG  F EAVWFKA + IFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG V+GY + G PL E  D +YPG + DPLGLADDP+AFAEL + K   NG     +MFGFF QA V G
Sbjct:    1 MATCAIQ-QSAFVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQSI--WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 235          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 3.317e-78
Identity = 157/240 (65.42%), Postives = 175/240 (72.92%), Query Frame = 3
Query:   54 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSCSPWYGPDRFKYLGPFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            MAT++   SSS  G+ + L P  NEL     +   RI+MR+T   +  S   WYGPDR KYLGPFS   PSYLTGEFPGDYGWDTA +SADP TFA NRELEVIHC WAMLGALGCVFPELLA+NG  F EAVWFKA A IFSEGGLDY GNP+LIHAQSILAIWACQVVLMG ++GY + G  L E  DPL PG + DPLGLADDP+A AEL + K   NG     +MFGFF QA V G
Sbjct:    1 MATASAIQSSSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPESI--WYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 236          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 5.658e-78
Identity = 156/241 (64.73%), Postives = 176/241 (73.03%), Query Frame = 3
Query:   54 MATSTMALSSSFVGKAVNLAPSGNELS------NGGRISMRKTGSKSVSSCSPWYGPDRFKYLGPFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            MATS +   S+F G+      S NEL       NGGR +MR+T   +  S   WYG DR KYLGPFS   PSYLTGEFPGDYGWDTAGLSADP TFA NRELEVIHC WAMLGALGCVFPE+L++NG  F EAVWFKA + IFSEGGLDYLGNP+LIHAQSILA+WA QVVLMG ++GY + G PL E  D +YPG + DPLGLADDP+AFAEL + K   NG     +MFGFF QA V G
Sbjct:    1 MATSAIE-QSAFAGQTA--LKSQNELVRKIGSFNGGRATMRRTVKSAPQSI--WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 235          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 1.260e-77
Identity = 149/210 (70.95%), Postives = 165/210 (78.57%), Query Frame = 3
Query:   54 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSCSPWYGPDRFKYLGPFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAF 668
            MATST+   S+F G+ + L P  NEL      NGGR+SMR+T   +  S   WYGPDR KYLGPFS   PSYLTGEFPGDYGWDTAGLSADP TFA NRELEVIHC WAMLGALGCVFPELLA+NG  F EAVWFKA + IF EGGLDYLGNP+L+HAQSILAIWACQVVLMGAV+GY + G PL E  D LYPG + DPLGLA+DP+AF
Sbjct:    1 MATSTIQ-QSAFAGQTL-LKPQ-NELVRKVGGNGGRVSMRRTIKSAPESI--WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.646e-77
Identity = 157/241 (65.15%), Postives = 175/241 (72.61%), Query Frame = 3
Query:   54 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTGSKSVSSCSPWYGPDRFKYLGPFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            MATS +   S+F G+      S NEL        GGR +MR+T   +  S   WYG DR KYLGPFS   PSYLTGEFPGDYGWDTAGLSADP TFA NRELEVIHC WAMLGALGCVFPE+L++NG  F EAVWFKA + IFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG V+GY + G PL E  D +YPG + DPLGLADDP+AFAEL + K   NG     +MFGFF QA V G
Sbjct:    1 MATSAIQ-QSAFAGQTA--LKSQNELVRKIGSFGGGRATMRRTVKSAPQSI--WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 235          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 4.790e-77
Identity = 146/207 (70.53%), Postives = 162/207 (78.26%), Query Frame = 3
Query:  138 GGRISMRKTGSKSVSSCSPWYGPDRFKYLGPFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            GGR++MR+T   +  S   WYG DR KYLGPFS   PSYLTGEFPGDYGWDTAGLSADP TFA NRELEVIHC WAMLGALGCVFPE+L++NG  F EAVWFKA + IFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG V+GY + G PL E  D +YPG + DPLGLADDP+AFAEL + K   NG     +MFGFF QA V G
Sbjct:    4 GGRVTMRRTVKSAPQSI--WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 207          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 2.373e-76
Identity = 147/206 (71.36%), Postives = 162/206 (78.64%), Query Frame = 3
Query:  141 GRISMRKTGSKSVSSCSPWYGPDRFKYLGPFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            GR SMR+T  K+V   S WYG DR K+LGPFS   PSYLTGEFPGDYGWDTAGLSADP TFA NRELEVIH  WAMLGALGC+FPELL++NG  F EAVWFKA A IFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG ++GY + G PL E  DPLYPG + DPLGLADDP+AFAEL + K   NG     +MFGFF QA V G
Sbjct:   32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 234          

HSP 2 Score: 23.483 bits (49), Expect = 2.373e-76
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  760 VGDLADHLADP-AIQCLGYATHLCP 831
            + +LADH+ADP A     +AT+  P
Sbjct:  238 IENLADHIADPVANNAWAFATNFVP 262          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 2.379e-76
Identity = 142/177 (80.23%), Postives = 151/177 (85.31%), Query Frame = 3
Query:  228 PFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            PFSG+PPSYLTGEFPGDYGWDTAGLSADP TFA NRELEVIH TWAMLGALGCVFPELL+RNG  F EAVWFKA + IFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAV+GY IAG PL EVTDP+YPG S DPLGLADDP+AFAEL + K   NG     +MFGFF QA V G
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKV-KELKNGRLAMFSMFGFFVQAIVTG 176          

HSP 2 Score: 23.8682 bits (50), Expect = 2.379e-76
Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  766 DLADHLADPA-IQCLGYATHLCP 831
            +LADHLADP       YAT+  P
Sbjct:  182 NLADHLADPVNNNAWAYATNFVP 204          
The following BLAST results are available for this feature:
BLAST of EY649784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB23_ORYSI5.117e-7965.42Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB48_MAIZE6.871e-7965.97Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB24_SOLLC1.489e-7865.56Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_PINTH3.317e-7865.42Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_TOBAC5.658e-7864.73Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_SILPR1.260e-7770.95Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB26_PETSP1.646e-7765.15Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC4.790e-7770.53Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_LEMGI2.373e-7671.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_CUCSA2.379e-7680.23Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-003-E02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649784 ID=EY649784; Name=EY649784; organism=Citrus sinensis; type=EST; length=930bp
CCCACGCGTTCGCTCGAACACTAGAGCTCACCAACAACTCTGATCATTGT
AAAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGC
TGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCT
CCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCATGTAGCCCGTGGTAC
GGCCCGGACAGATTCAAGTACTTGGGTCCATTCTCTGGCGATCCCCCAAG
CTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGC
TTTCAGCTGACCCATAAACCTTTGCCAATAACCGTGAACTCGAAGTCATC
CACTGCACATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCT
CTTGGCCCGCAACGGATTCAACTTCTGTGAGGCCGTGTGGTTCAAGGCGG
CGGCCCATATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGC
CTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTT
GATGGGAGCCGTTGACGGTTACATAATTGCTGGACGGCCGCTNCGTGAAG
TGACTGACCCATTGTACCCAGGGTGCAGCTCTGATCCATTGGGTTTGGCT
GATGACCCGGACGCGTTTGCTGAGCTCATGCTGACGAAATCANCATGGAA
TGGTGGCTATGTCACCATGTTTGGTTTCTTCGGTCAGGCATAGGTACCGG
GCACGGACCGTGGGAGACTTGGCGGACCACTTGGCTGACCCTGCCATACA
ATGCCTGGGCTACGCCACACACTTGTGCCCGGAAGGCAGCTCGGTTGATA
GAATTTTCTCTTTCGGGTCTTGGATTCATGAAATCGGGGGAGCCATGGAG
CTTAATTGAAAGGCATATAATAAATGCTAA
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