EY649784

Overview
NameEY649784
Unique NameEY649784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 4.055e-76
Identity = 158/241 (65.56%), Postives = 173/241 (71.78%), Query Frame = 3
Query:   54 MATSTMALSSSFVGKAVNLAPSGNEL----SNGG--RISMRKTGSKSVSSCSPWYGPDRFKYLGPFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            MATS +   S+F GK       GNE      N G  R +MR+T   +  S   WYGPDR KYLGPFS   PSYLTGEFPGDYGWDTAGLSADP TFA NRELEVIH  WAMLGALGC FPELL +NG  F EAVWFKA + IF+EGGLDYLGNP+LIHAQSILAIWA QVVLMG V+GY + G PL E  DPLYPG + DPLGLADDPD+FAEL + K   NG     +MFGFF QA V G
Sbjct:    1 MATSAIQ-QSAFTGKTG--LRQGNEFIRKRGNFGQARFTMRRTVKSAPESI--WYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKV-KELKNGRLAMFSMFGFFVQAIVTG 235          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.888e-65
Identity = 142/225 (63.11%), Postives = 157/225 (69.78%), Query Frame = 3
Query:   90 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSCSPWYGPDRFKYLGPFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPGTD 758
            + K   L P  + L      +M K  +KS  S S      R KYLGPFSG+ PSYLTGEFPGDYGWDTAGLSA P TFA NRELEVIH   AM  ALGC+FPELL+  G  F EAVWFKA A IFSEGGLDYLGNPSL+HAQSILAIW  +V+LMGAV+GY IA  PL EVTDPLYPG S D LGLA+D +AFAEL + K   NG     +MFGFF QA V   D
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKV-KELKNGRLAMFSMFGFFVQAIVSRKD 240          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.466e-65
Identity = 132/205 (64.39%), Postives = 153/205 (74.63%), Query Frame = 3
Query:  156 RKTGSKSV---SSCSPWYGPDRFKYLGPFSGDP-PSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            +KT +K+    SS   +YGP+R K+LGP+S +  P+YLTGEFPGDYGWDTAGLSADP TF   RELE+IH  WAMLGALGC  PELLA++G  F EAVWFKA A IFSEGGLDYLGNPSL+HAQ+I+A  A QV+LMG ++GY + G P  E  DPLYPG S DPLGLADDPD FAEL + K   NG     +MFGFF QA V G
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKV-KEIKNGRLASFSMFGFFVQAIVTG 223          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.936e-63
Identity = 126/189 (66.67%), Postives = 141/189 (74.60%), Query Frame = 3
Query:  195 WYGPDRFKYLGPFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARN-GFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            WYGPDR K+LGPFS + P+YLTGEFPGDYGWDTAGLSADP TF   RELEVIH  WA+LGALG + PELL+   G  F E VWFKA A IFSEGGLDYLG+P+LIHAQ+I+A  A QVVLMG ++GY + G P  E  DPLYPG S DPLGLADDPD FAEL + K   NG     + FGFF QA V G
Sbjct:   39 WYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKV-KEIKNGRLAMFSCFGFFVQAIVTG 226          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.352e-62
Identity = 134/236 (56.78%), Postives = 160/236 (67.80%), Query Frame = 3
Query:   57 ATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSCSPWYGPDRFKYLGPFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLAR-NGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCS-SDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            +++T+  ++ F+G+  N  P  + ++ G   S R T S  +     WYGPDR KYLGPFS   PSYL GEFPGDYGWDTAGLSADP  FA NR LEVIH  WAMLGALGC+FPE+L +    +F E VWFKA + IFS+GGLDYLGNP+L+HAQSILA+   QVVLMG V+G+ I G P     + LYPG    DPLGLADDP  FAEL + K   NG     +MFGFF QA V G
Sbjct:    9 SSTTVVKATPFLGQTKNANPLRDVVAMG---SARFTMSNDL-----WYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 235          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 6.285e-61
Identity = 137/239 (57.32%), Postives = 155/239 (64.85%), Query Frame = 3
Query:   54 MATSTMALSS-SFVGKAVNLAPSGNELSNGG-RISMRKTGSKSVSSCSPWYGPDRFKYLGPFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLAR-NGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCS-SDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            MA++ MA +S + V K   L+  G   S    R     T  +       WYGPDR KYLGPFS   PSYL GEFPGDYGWDTAGLSADP  FA NR LEVIH  WAMLGALGCVFPE+L +  G  F E VWFKA + IFSEGGLDYLGNP+L+HAQSILA+   QV+LMG V+G+ I G       + LYPG    DPLGLADDP  FAEL + K   NG     +MFGFF QA V G
Sbjct:    1 MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 238          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.790e-55
Identity = 118/193 (61.14%), Postives = 135/193 (69.95%), Query Frame = 3
Query:  195 WYGPDRFKYLGPFS-GDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLAR-NGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAG--RPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNGGYVTMF---GFFGQA*VPG 752
            +YGPDR K+LGPFS  D P YLTGEFPGDYGWDTAGLSADP TFA  RE+E+IH  WA+LGALG + PELL++  G  F E VWFKA A IF++GGL+YLGN SLIHAQSI+A  A QVVLMG  + Y   G      +  D LYPG   DPLGLADDPD FAEL + +     G + MF   GFF QA V G
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEI--KNGRLAMFSCLGFFVQAIVTG 223          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.188e-51
Identity = 118/203 (58.13%), Postives = 135/203 (66.50%), Query Frame = 3
Query:  159 KTGSKSVSSCSPWYGPDRFKYLGPFSGDPPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLA-RNGFNFCEA-VWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNGGYVTMF---GFFGQA*VPG 752
            K  SKS SS + +YGPD            P   TGEFPGDYGWDTAGLSADP TF   RELE+IH    +LGALG V PELLA  +G  F +A +WFKA A IF +GGL+YLGNPSLIHAQ+I+A  A QVVLMG V+GY + G P  E  DPLYPG + DPLGLADDPD FAEL + +     G + MF   GFF QA V G
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEI--KNGRLAMFACLGFFVQAIVTG 244          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.476e-38
Identity = 83/121 (68.60%), Postives = 92/121 (76.03%), Query Frame = 3
Query:  396 ELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            ELL +NG  F EAVWFKA A IFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG ++GY + G PL E  DPLYPG + DPLGLADDP+A AEL + K   NG     +MFGFF QA V G
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 120          
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.754e-27
Identity = 89/206 (43.20%), Postives = 107/206 (51.94%), Query Frame = 3
Query:  168 SKSVSSCSP----WYGPDRFKYLGPFSGDP---PSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFC--EAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            SK+VS  S     WYGPDR  +L     D    P YL GE  GDYG+D  GL   P  FA  +  E+IH  WAMLGA G + PE L + G N C  EAVWFK  A +     L+Y G    I    +LA+ A +VVL+G  + Y I      +  D L+PG   DPLGLA DP+  A L+  K   NG      M GFF QA V G
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGAN-CGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNG--LDFEDKLHPGGPFDPLGLAKDPEQGA-LLKVKEIKNGRLAMFAMLGFFIQAYVTG 247          
The following BLAST results are available for this feature:
BLAST of EY649784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB215_PEA4.055e-7665.56Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_MALDO1.888e-6563.11Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLRE2.466e-6564.39Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO3.936e-6366.67Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC4.352e-6256.78Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU6.285e-6157.32Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE8.790e-5561.14Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA1.188e-5158.13Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY7.476e-3868.60Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH7.754e-2743.20Chlorophyll a-b binding protein CP26, chloroplasti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-003-E02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649784 ID=EY649784; Name=EY649784; organism=Citrus sinensis; type=EST; length=930bp
CCCACGCGTTCGCTCGAACACTAGAGCTCACCAACAACTCTGATCATTGT
AAAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGC
TGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCT
CCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCATGTAGCCCGTGGTAC
GGCCCGGACAGATTCAAGTACTTGGGTCCATTCTCTGGCGATCCCCCAAG
CTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGC
TTTCAGCTGACCCATAAACCTTTGCCAATAACCGTGAACTCGAAGTCATC
CACTGCACATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCT
CTTGGCCCGCAACGGATTCAACTTCTGTGAGGCCGTGTGGTTCAAGGCGG
CGGCCCATATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGC
CTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTT
GATGGGAGCCGTTGACGGTTACATAATTGCTGGACGGCCGCTNCGTGAAG
TGACTGACCCATTGTACCCAGGGTGCAGCTCTGATCCATTGGGTTTGGCT
GATGACCCGGACGCGTTTGCTGAGCTCATGCTGACGAAATCANCATGGAA
TGGTGGCTATGTCACCATGTTTGGTTTCTTCGGTCAGGCATAGGTACCGG
GCACGGACCGTGGGAGACTTGGCGGACCACTTGGCTGACCCTGCCATACA
ATGCCTGGGCTACGCCACACACTTGTGCCCGGAAGGCAGCTCGGTTGATA
GAATTTTCTCTTTCGGGTCTTGGATTCATGAAATCGGGGGAGCCATGGAG
CTTAATTGAAAGGCATATAATAAATGCTAA
back to top