EY649784

Overview
NameEY649784
Unique NameEY649784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.772e-25
Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 3 
Query:  498 SLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            SL+HAQSILAIWACQVVLMGAV+GY IAG PL EV DPLYPG S DPLGLA+DP+AFAEL + K   NG     +MFGFF QA V G
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 86

HSP 2 Score: 23.8682 bits (50), Expect = 1.772e-25
Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = 1 
Query:  766 DLADHLADPA-IQCLGYATHLCP 831
            +LADHLADP       YAT+  P
Sbjct:   92 NLADHLADPVNNNAWSYATNFVP 114
[Close]
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.843e-25
Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 3 
Query:  498 SLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            SL+HAQSILAIWACQVVLMGAV+GY IAG PL EV DPLYPG S DPLGLA+DP+AFAEL + K   NG     +MFGFF QA V G
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 235

HSP 2 Score: 22.3274 bits (46), Expect = 4.843e-25
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 1 
Query:  766 DLADHLADPA-IQCLGYATHLCP 831
            +LADHLADP       +AT+  P
Sbjct:  241 NLADHLADPVNNNAWAFATNFVP 263
[Close]
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.843e-25
Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 3 
Query:  498 SLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            SL+HAQSILAIWACQVVLMGAV+GY IAG PL EV DPLYPG S DPLGLA+DP+AFAEL + K   NG     +MFGFF QA V G
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 235

HSP 2 Score: 22.3274 bits (46), Expect = 4.843e-25
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 1 
Query:  766 DLADHLADPA-IQCLGYATHLCP 831
            +LADHLADP       +AT+  P
Sbjct:  241 NLADHLADPVNNNAWAFATNFVP 263
[Close]
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.202e-25
Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 3 
Query:  498 SLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            SL+HAQSILAIWACQVVLMGAV+GY IAG PL EV DPLYPG S DPLGLA+DP+AFAEL + K   NG     +MFGFF QA V G
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 237

HSP 2 Score: 21.557 bits (44), Expect = 8.202e-25
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 1 
Query:  766 DLADHLADPA-IQCLGYATHLCP 831
            +LADH+ADP       +AT+  P
Sbjct:  243 NLADHIADPVNNNAWAFATNFVP 265
[Close]
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.202e-25
Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 3 
Query:  498 SLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            SL+HAQSILAIWACQVVLMGAV+GY IAG PL EV DPLYPG S DPLGLA+DP+AFAEL + K   NG     +MFGFF QA V G
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 237

HSP 2 Score: 21.557 bits (44), Expect = 8.202e-25
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 1 
Query:  766 DLADHLADPA-IQCLGYATHLCP 831
            +LADH+ADP       +AT+  P
Sbjct:  243 NLADHIADPVNNNAWAFATNFVP 265
[Close]
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.544e-23
Identity = 61/95 (64.21%), Postives = 68/95 (71.58%), Query Frame = 3 
Query:  477 LDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAG-RPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752
            LDYLGNPSL+HAQSILAIWA QV+LMGAV+GY +AG  PL E  D LYPG S DPL    DP+AFAEL + K   NG     +MFGFF QA V G
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 94

HSP 2 Score: 22.3274 bits (46), Expect = 7.544e-23
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 1 
Query:  766 DLADHLADPA-IQCLGYATHLCP 831
            +LADHLADP       +AT+  P
Sbjct:  100 NLADHLADPVNNNAWAFATNFVP 122
[Close]
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.764e-16
Identity = 80/244 (32.79%), Postives = 103/244 (42.21%), Query Frame = 3 
Query:   54 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSCSPWYGPDRFKYLGPFSGDP-PSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAA-HIFSEGGLDYLGNP-SLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDP---LYPGCSSDPLGLADDPDAFAELMLTKSXWNGGYVTMFGFFG----QA*VPGT 755
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G P P++L G  PGD+G+D  GL+  P  F   +E E+ HC WAML   G + PE L           W KA       +G   YLGNP    +  +ILAI    +           A +      DP    YPG + DPLG + DP  F EL L +     G + M  F G    Q+  PGT
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGN-------WVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIA---------FAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEI--KNGRLAMLAFVGFCVQQSAYPGT 215
[Close]
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.677e-13
Identity = 52/160 (32.50%), Postives = 74/160 (46.25%), Query Frame = 3 
Query:  243 PPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVDGYIIAGRPLREVTDPLYP-GCSSDPLGLADDPDAFAELMLTKSXWNG 704
            PP +L G  PGD+G+D  GL++DP +   N++ E++HC WAMLGA G   PELL + G       W+ A    +      +    +L   + +L  WA       ++  G V+   I        TD  YP G   DPLG      A  + + TK   NG
Sbjct:   74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNG 226
[Close]
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.879e-13
Identity = 61/192 (31.77%), Postives = 85/192 (44.27%), Query Frame = 3 
Query:  153 MRKTGSKSVSSCSPWYGPDRFKYLGPFSGD------PPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTD-PLYPGCSSDPLGLADDPDAFAELMLTKSXWNG 704
            +  T SK  ++   + G   F      S D       PSYL G  PGD+G+D+ GL   P      +E E+IHC WAML   G + PE L           W KA       GG   YLG P  +   ++  I A + + +  V+      R + + ++   YPG + DPLG + DP  F EL + K   NG
Sbjct:   19 LSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGN-------WVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQ----RSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKV-KEIKNG 196
[Close]
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.387e-12
Identity = 48/90 (53.33%), Postives = 55/90 (61.11%), Query Frame = 3 
Query:  498 SLIHAQSILAIWACQVVLMGAVDGYII---AGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNGGYVT--MFGFFGQA*VPG 752
            +LIHA+S+LAI A QV+LMGAV+GY     A     E  D LYPG   DPLGLADDPD F EL + K   NG      M GF+ QA V G
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKV-KEIKNGRLAMSGMLGFYAQAIVTG 92

HSP 2 Score: 20.7866 bits (42), Expect = 1.387e-12
Identity = 8/16 (50.00%), Postives = 8/16 (50.00%), Query Frame = 2 
Query:  725 FLRSGIGTGHGPWETW 772
            F    I TG GP E W
Sbjct:   84 FYAQAIVTGEGPVENW 99
The following BLAST results are available for this feature:
BLAST of EY649784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB2D_SOLLC1.772e-2571.26Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC4.843e-2571.26Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC4.843e-2571.26Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC8.202e-2571.26Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC8.202e-2571.26Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_RAPSA7.544e-2364.21Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU2.764e-1632.79Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_SOLLC1.677e-1332.50Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB11_SOLLC4.879e-1331.77Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB21_EUGGR1.387e-1253.33Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-003-E02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649784 ID=EY649784; Name=EY649784; organism=Citrus sinensis; type=EST; length=930bp
CCCACGCGTTCGCTCGAACACTAGAGCTCACCAACAACTCTGATCATTGT
AAAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGC
TGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCT
CCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCATGTAGCCCGTGGTAC
GGCCCGGACAGATTCAAGTACTTGGGTCCATTCTCTGGCGATCCCCCAAG
CTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGC
TTTCAGCTGACCCATAAACCTTTGCCAATAACCGTGAACTCGAAGTCATC
CACTGCACATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCT
CTTGGCCCGCAACGGATTCAACTTCTGTGAGGCCGTGTGGTTCAAGGCGG
CGGCCCATATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGC
CTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTT
GATGGGAGCCGTTGACGGTTACATAATTGCTGGACGGCCGCTNCGTGAAG
TGACTGACCCATTGTACCCAGGGTGCAGCTCTGATCCATTGGGTTTGGCT
GATGACCCGGACGCGTTTGCTGAGCTCATGCTGACGAAATCANCATGGAA
TGGTGGCTATGTCACCATGTTTGGTTTCTTCGGTCAGGCATAGGTACCGG
GCACGGACCGTGGGAGACTTGGCGGACCACTTGGCTGACCCTGCCATACA
ATGCCTGGGCTACGCCACACACTTGTGCCCGGAAGGCAGCTCGGTTGATA
GAATTTTCTCTTTCGGGTCTTGGATTCATGAAATCGGGGGAGCCATGGAG
CTTAATTGAAAGGCATATAATAAATGCTAA
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