EY649784
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.772e-25 Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 3 Query: 498 SLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752 SL+HAQSILAIWACQVVLMGAV+GY IAG PL EV DPLYPG S DPLGLA+DP+AFAEL + K NG +MFGFF QA V G Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 86 HSP 2 Score: 23.8682 bits (50), Expect = 1.772e-25 Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = 1 Query: 766 DLADHLADPA-IQCLGYATHLCP 831 +LADHLADP YAT+ P Sbjct: 92 NLADHLADPVNNNAWSYATNFVP 114
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 4.843e-25 Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 3 Query: 498 SLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752 SL+HAQSILAIWACQVVLMGAV+GY IAG PL EV DPLYPG S DPLGLA+DP+AFAEL + K NG +MFGFF QA V G Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 235 HSP 2 Score: 22.3274 bits (46), Expect = 4.843e-25 Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 1 Query: 766 DLADHLADPA-IQCLGYATHLCP 831 +LADHLADP +AT+ P Sbjct: 241 NLADHLADPVNNNAWAFATNFVP 263
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 4.843e-25 Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 3 Query: 498 SLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752 SL+HAQSILAIWACQVVLMGAV+GY IAG PL EV DPLYPG S DPLGLA+DP+AFAEL + K NG +MFGFF QA V G Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 235 HSP 2 Score: 22.3274 bits (46), Expect = 4.843e-25 Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 1 Query: 766 DLADHLADPA-IQCLGYATHLCP 831 +LADHLADP +AT+ P Sbjct: 241 NLADHLADPVNNNAWAFATNFVP 263
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 8.202e-25 Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 3 Query: 498 SLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752 SL+HAQSILAIWACQVVLMGAV+GY IAG PL EV DPLYPG S DPLGLA+DP+AFAEL + K NG +MFGFF QA V G Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 237 HSP 2 Score: 21.557 bits (44), Expect = 8.202e-25 Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 1 Query: 766 DLADHLADPA-IQCLGYATHLCP 831 +LADH+ADP +AT+ P Sbjct: 243 NLADHIADPVNNNAWAFATNFVP 265
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 8.202e-25 Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 3 Query: 498 SLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752 SL+HAQSILAIWACQVVLMGAV+GY IAG PL EV DPLYPG S DPLGLA+DP+AFAEL + K NG +MFGFF QA V G Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 237 HSP 2 Score: 21.557 bits (44), Expect = 8.202e-25 Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 1 Query: 766 DLADHLADPA-IQCLGYATHLCP 831 +LADH+ADP +AT+ P Sbjct: 243 NLADHIADPVNNNAWAFATNFVP 265
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 7.544e-23 Identity = 61/95 (64.21%), Postives = 68/95 (71.58%), Query Frame = 3 Query: 477 LDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAG-RPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNG--GYVTMFGFFGQA*VPG 752 LDYLGNPSL+HAQSILAIWA QV+LMGAV+GY +AG PL E D LYPG S DPL DP+AFAEL + K NG +MFGFF QA V G Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKV-KEIKNGRLAMFSMFGFFVQAIVTG 94 HSP 2 Score: 22.3274 bits (46), Expect = 7.544e-23 Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 1 Query: 766 DLADHLADPA-IQCLGYATHLCP 831 +LADHLADP +AT+ P Sbjct: 100 NLADHLADPVNNNAWAFATNFVP 122
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.764e-16 Identity = 80/244 (32.79%), Postives = 103/244 (42.21%), Query Frame = 3 Query: 54 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSCSPWYGPDRFKYLGPFSGDP-PSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAA-HIFSEGGLDYLGNP-SLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTDP---LYPGCSSDPLGLADDPDAFAELMLTKSXWNGGYVTMFGFFG----QA*VPGT 755 MA+S+ S S VG LAPS +G T S V+ + W F G P P++L G PGD+G+D GL+ P F +E E+ HC WAML G + PE L W KA +G YLGNP + +ILAI + A + DP YPG + DPLG + DP F EL L + G + M F G Q+ PGT Sbjct: 1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGN-------WVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIA---------FAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEI--KNGRLAMLAFVGFCVQQSAYPGT 215
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.677e-13 Identity = 52/160 (32.50%), Postives = 74/160 (46.25%), Query Frame = 3 Query: 243 PPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVDGYIIAGRPLREVTDPLYP-GCSSDPLGLADDPDAFAELMLTKSXWNG 704 PP +L G PGD+G+D GL++DP + N++ E++HC WAMLGA G PELL + G W+ A + + +L + +L WA ++ G V+ I TD YP G DPLG A + + TK NG Sbjct: 74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNG 226
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.879e-13 Identity = 61/192 (31.77%), Postives = 85/192 (44.27%), Query Frame = 3 Query: 153 MRKTGSKSVSSCSPWYGPDRFKYLGPFSGD------PPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVDGYIIAGRPLREVTD-PLYPGCSSDPLGLADDPDAFAELMLTKSXWNG 704 + T SK ++ + G F S D PSYL G PGD+G+D+ GL P +E E+IHC WAML G + PE L W KA GG YLG P + ++ I A + + + V+ R + + ++ YPG + DPLG + DP F EL + K NG Sbjct: 19 LSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGN-------WVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQ----RSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKV-KEIKNG 196
BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.387e-12 Identity = 48/90 (53.33%), Postives = 55/90 (61.11%), Query Frame = 3 Query: 498 SLIHAQSILAIWACQVVLMGAVDGYII---AGRPLREVTDPLYPGCSSDPLGLADDPDAFAELMLTKSXWNGGYVT--MFGFFGQA*VPG 752 +LIHA+S+LAI A QV+LMGAV+GY A E D LYPG DPLGLADDPD F EL + K NG M GF+ QA V G Sbjct: 4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKV-KEIKNGRLAMSGMLGFYAQAIVTG 92 HSP 2 Score: 20.7866 bits (42), Expect = 1.387e-12 Identity = 8/16 (50.00%), Postives = 8/16 (50.00%), Query Frame = 2 Query: 725 FLRSGIGTGHGPWETW 772 F I TG GP E W Sbjct: 84 FYAQAIVTGEGPVENW 99 The following BLAST results are available for this feature:
BLAST of EY649784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
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Sequences
The
following sequences are available for this feature:
EST sequence >EY649784 ID=EY649784; Name=EY649784; organism=Citrus sinensis; type=EST; length=930bpback to top |