EY649784

Overview
NameEY649784
Unique NameEY649784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY649784 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.420e-12
Identity = 59/187 (31.55%), Postives = 83/187 (44.39%), Query Frame = 3 
Query:  165 GSKSVSSCSPWYGPDRFKYLGPFSGD-PPSYLTGEFPGDYGWDTAGLSADP*TFANNRELEVIHCTWAMLGALGCVFPELLARNGFNFCEAVWFKAAAHIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVDGYIIAGRPLREVTDPLYP-GCSSDPLGLADDPDAFAELMLTKSXWNG 704
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DP +   N + E++H  WAMLGA G   PE L + G       W+ A    +      +    +L   + +L  WA       ++  G V+   I        TD  YP G   DPLG      A  + + TK   NG
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNG 226
The following BLAST results are available for this feature:
BLAST of EY649784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB12_PETHY1.420e-1231.55Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-003-E02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649784 ID=EY649784; Name=EY649784; organism=Citrus sinensis; type=EST; length=930bp
CCCACGCGTTCGCTCGAACACTAGAGCTCACCAACAACTCTGATCATTGT
AAAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGC
TGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCT
CCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCATGTAGCCCGTGGTAC
GGCCCGGACAGATTCAAGTACTTGGGTCCATTCTCTGGCGATCCCCCAAG
CTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGC
TTTCAGCTGACCCATAAACCTTTGCCAATAACCGTGAACTCGAAGTCATC
CACTGCACATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCT
CTTGGCCCGCAACGGATTCAACTTCTGTGAGGCCGTGTGGTTCAAGGCGG
CGGCCCATATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGC
CTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTT
GATGGGAGCCGTTGACGGTTACATAATTGCTGGACGGCCGCTNCGTGAAG
TGACTGACCCATTGTACCCAGGGTGCAGCTCTGATCCATTGGGTTTGGCT
GATGACCCGGACGCGTTTGCTGAGCTCATGCTGACGAAATCANCATGGAA
TGGTGGCTATGTCACCATGTTTGGTTTCTTCGGTCAGGCATAGGTACCGG
GCACGGACCGTGGGAGACTTGGCGGACCACTTGGCTGACCCTGCCATACA
ATGCCTGGGCTACGCCACACACTTGTGCCCGGAAGGCAGCTCGGTTGATA
GAATTTTCTCTTTCGGGTCTTGGATTCATGAAATCGGGGGAGCCATGGAG
CTTAATTGAAAGGCATATAATAAATGCTAA
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