EY649764 | Citrus Genome Database

Overview


Name	EY649764
Unique Name	EY649764
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	921

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.722e-23
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = 1

Query:  280 LHIFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLI 489
            + IFV TLTGKTI LEVE  D I+NVKAKIQDK+GIPPDQQRLIFAGKQL++GRTL+DYNI  E T HL+
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 104.375 bits (259), Expect = 9.656e-22
Identity = 54/69 (78.26%), Postives = 57/69 (82.61%), Query Frame = 3

Query:   51 MQILVKTLTGKTITLEVESSDTIDNVKANIQDKEWIPPYQNMLIFAGKHLEDGRTLADYNIHKELTLTL 257
            MQI VKTLTGKTI LEVE SDTI+NVKA IQDKE IPP Q  LIFAGK LE+GRTL+DYNI KE TL L
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHL 69

HSP 3 Score: 83.1889 bits (204), Expect = 2.304e-15
Identity = 45/71 (63.38%), Postives = 51/71 (71.83%), Query Frame = 2

Query:  509 MQISVKTLTEKTITLDVESSDTIVNVIATIHDDVGISPDQQMLIYAGQHLEDARTLADYIIQMESAFMLCI 721
            MQI VKTLT KTI L+VE SDTI NV A I D  GI PDQQ LI+AG+ LE+ RTL+DY IQ ES   L +
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVL 71

[Close]

BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 1

Query:  280 LHIFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLI 489
            + IFV TLTG TI LEVE  D I+NVKAKIQDK+GIPPDQQRLIFA KQL++GRTL+DYNI  E T HL+
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 99.3673 bits (246), Expect = 3.106e-20
Identity = 52/69 (75.36%), Postives = 55/69 (79.71%), Query Frame = 3

Query:   51 MQILVKTLTGKTITLEVESSDTIDNVKANIQDKEWIPPYQNMLIFAGKHLEDGRTLADYNIHKELTLTL 257
            MQI VKTLTG TI LEVE SDTI+NVKA IQDKE IPP Q  LIFA K LE+GRTL+DYNI KE TL L
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHL 69

HSP 3 Score: 78.1814 bits (191), Expect = 7.410e-14
Identity = 43/71 (60.56%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  509 MQISVKTLTEKTITLDVESSDTIVNVIATIHDDVGISPDQQMLIYAGQHLEDARTLADYIIQMESAFMLCI 721
            MQI VKTLT  TI L+VE SDTI NV A I D  GI PDQQ LI+A + LE+ RTL+DY IQ ES   L +
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVL 71

[Close]

BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.452e-19
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 1

Query:  313 TITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLI 489
            TITLEVE  D I+NVKAKIQDK+GIPPDQQRLIFAGKQL+DGRTL+DYNI  E T HL+
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 59

HSP 2 Score: 89.3521 bits (220), Expect = 3.214e-17
Identity = 46/58 (79.31%), Postives = 48/58 (82.76%), Query Frame = 3

Query:   84 TITLEVESSDTIDNVKANIQDKEWIPPYQNMLIFAGKHLEDGRTLADYNIHKELTLTL 257
            TITLEVE SDTI+NVKA IQDKE IPP Q  LIFAGK LEDGRTL+DYNI KE TL L
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 58

HSP 3 Score: 72.0182 bits (175), Expect = 5.311e-12
Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 2

Query:  542 TITLDVESSDTIVNVIATIHDDVGISPDQQMLIYAGQHLEDARTLADYIIQMESAFMLCI 721
            TITL+VE SDTI NV A I D  GI PDQQ LI+AG+ LED RTL+DY IQ ES   L +
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 60

[Close]

BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.985e-18
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 1

Query:  280 LHIFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLI 489
            + IFV TLTGKTIT+E E  D +  VK KI DK+G+P DQQRLI+AGKQL+D +TLADYNI  E T H++
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMV 70

HSP 2 Score: 87.0409 bits (214), Expect = 1.595e-16
Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = 3

Query:   51 MQILVKTLTGKTITLEVESSDTIDNVKANIQDKEWIPPYQNMLIFAGKHLEDGRTLADYNIHKELTL 251
            MQI VKTLTGKTIT+E E  DT+  VK  I DKE +P  Q  LI+AGK LED +TLADYNI KE TL
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTL 67

HSP 3 Score: 74.7146 bits (182), Expect = 8.193e-13
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 2

Query:  509 MQISVKTLTEKTITLDVESSDTIVNVIATIHDDVGISPDQQMLIYAGQHLEDARTLADYIIQMESAFMLCI 721
            MQI VKTLT KTIT++ E  DT+  V   I D  G+  DQQ LIYAG+ LEDA+TLADY IQ ES   + +
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVL 71

[Close]

BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.231e-17
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1

Query:  280 LHIFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLI 489
            + IF+ TLTGKTIT E E  + + ++K KI DK+G+P DQQRLIFAGKQL+D +T+ADYNI  E T H++
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMV 70

HSP 2 Score: 84.3445 bits (207), Expect = 1.034e-15
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 3

Query:   51 MQILVKTLTGKTITLEVESSDTIDNVKANIQDKEWIPPYQNMLIFAGKHLEDGRTLADYNIHKELTL 251
            MQI +KTLTGKTIT E E ++T+ ++K  I DKE +P  Q  LIFAGK LED +T+ADYNI KE TL
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 67

HSP 3 Score: 69.707 bits (169), Expect = 2.636e-11
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  509 MQISVKTLTEKTITLDVESSDTIVNVIATIHDDVGISPDQQMLIYAGQHLEDARTLADYIIQMESAFMLCI 721
            MQI +KTLT KTIT + E ++T+ ++   I D  G+  DQQ LI+AG+ LED++T+ADY IQ ES   + +
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVL 71

[Close]

BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  286 IFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLITA 495
            I V TLTGK I +++E  D ID VK ++++K+GIPP QQRLI+AGKQL D +T  DYNI      HL+ A
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA 72

HSP 2 Score: 72.7886 bits (177), Expect = 3.113e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 3

Query:   57 ILVKTLTGKTITLEVESSDTIDNVKANIQDKEWIPPYQNMLIFAGKHLEDGRTLADYNI 233
            I VKTLTGK I +++E +DTID VK  +++KE IPP Q  LI+AGK L D +T  DYNI
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNI 61

[Close]

BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.167e-13
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  286 IFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLITA 495
            I V TLTGK I +++E  D ID +K ++++K+GIPP QQRLI+AGKQL D +T  DYNI      HL+ A
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA 72

HSP 2 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 3

Query:   57 ILVKTLTGKTITLEVESSDTIDNVKANIQDKEWIPPYQNMLIFAGKHLEDGRTLADYNI 233
            I VKTLTGK I +++E +DTID +K  +++KE IPP Q  LI+AGK L D +T  DYNI
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNI 61

[Close]

BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.167e-13
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  286 IFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLITA 495
            I V TLTGK I +++E  D ID +K ++++K+GIPP QQRLI+AGKQL D +T  DYNI      HL+ A
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA 72

HSP 2 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 3

Query:   57 ILVKTLTGKTITLEVESSDTIDNVKANIQDKEWIPPYQNMLIFAGKHLEDGRTLADYNI 233
            I VKTLTGK I +++E +DTID +K  +++KE IPP Q  LI+AGK L D +T  DYNI
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNI 61

[Close]

BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.167e-13
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:  286 IFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLITA 495
            I V TLTGK I +++E  D ID +K ++++K+GIPP QQRLI+AGKQL D +T  DYNI      HL+ A
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA 72

HSP 2 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 3

Query:   57 ILVKTLTGKTITLEVESSDTIDNVKANIQDKEWIPPYQNMLIFAGKHLEDGRTLADYNI 233
            I VKTLTGK I +++E +DTID +K  +++KE IPP Q  LI+AGK L D +T  DYNI
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNI 61

[Close]

BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.167e-13
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 1

Query:  286 IFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLITA 495
            I V TLTGK I +++E  D +D +K ++++K+GIPP QQRLIF+GKQ++D +T ADY +      HL+ A
Sbjct:    3 IKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLA 72

HSP 2 Score: 69.707 bits (169), Expect = 2.636e-11
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 3

Query:   51 MQILVKTLTGKTITLEVESSDTIDNVKANIQDKEWIPPYQNMLIFAGKHLEDGRTLADYNI 233
            M I VKTLTGK I +++E +D +D +K  +++KE IPP Q  LIF+GK + D +T ADY +
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKV 61

The following BLAST results are available for this feature:

BLAST of EY649764 vs. ExPASy Swiss-Prot

BLAST of EY649764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89


Match Name	E-value	Identity	Description
UBIQ_LEIMA	6.722e-23	75.71	Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1	[more]
UBIQ_LEITA	2.162e-21	72.86	Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3...	[more]
UBIQ_LUMTE	3.452e-19	79.66	Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ...	[more]
UBIL_NPVOP	4.985e-18	62.86	Ubiquitin-like protein OS=Orgyia pseudotsugata mul...	[more]
UBIL_NPVAC	3.231e-17	58.57	Ubiquitin-like protein OS=Autographa californica n...	[more]
RUB1_DESAN	1.660e-13	54.29	NEDD8-like protein RUB1 OS=Deschampsia antarctica ...	[more]
RUB2_ORYSJ	2.167e-13	52.86	NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap...	[more]
RUB1_ORYSJ	2.167e-13	52.86	NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap...	[more]
RUB1_ARATH	2.167e-13	52.86	NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN...	[more]
NEDD8_DROME	2.167e-13	48.57	NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-003-C05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY649764 ID=EY649764; Name=EY649764; organism=Citrus sinensis; type=EST; length=921bp
ATCTTAACTTTTAATTCAATAAAAGGCCTCCTTCTGTTCTCTCTGTCAAG
ATGCAAATCTTAGTGAAAACTCTCACCGGCAAGACAATAACCCTTGAGGT
TGAAAGCTCCGACACCATAGATAATGTAAAAGCCAATATCCAAGACAAGG
AATGGATCCCACCATATCAAAATATGCTTATCTTTGCTGGTAAACATCTC
GAGGATGGTCGCACACTTGCTGACTATAATATCCATAAAGAATTAACCCT
CACACTTGGTCCTTCGACTTACGGGTGGTCTGCACATATTTGTAAATACC
CTCACTGGCAAGACTATTACTCTTGAAGTGGAAAGCTTCGACGCCATTGA
CAATGTGAAAGCCAAGATTCAAGACAAGGATGGGATCCCACCTGACCAAC
AAAGACTTATCTTTGCCGGTAAACAGCTCGATGATGGCCGCACACTTGCT
GATTATAACATACACATAGAGTAAACCCCGCACTTGATAACTGCGTCTGC
GAGGTGGTATGCAGATCTCTGTAAAGACCCTGACTGAGAAGACTATCACC
CTTGATGTGGAAAGCTCCGACACCATTGTCAATGTCATAGCCACAATCCA
TGATGATGTAGGGATCTCACCAGACCAACAAATGCTTATATATGCTGGTC
AACATCTAGAGGATGCACGCACACTGGCAGACTACATCATCCAGATGGAA
TCAGCATTCATGCTGTGCATAGTCTCAAGGGTGGCATGCATATATTTGAT
GAAACTCTGACCGGAAAGACTATCACTTACGAGCTGAAATCTCTGCACGA
TCGACATGTCATGCCAACATCAGGACATGATGGCATGCACTGATCACATT
AGTGATCTTTAGCGCAAACAGCTGATGATGTCTGCTCTNGCTGCTACACA
TTCAGAGAGTCATCTACTNGG