EY649764

Overview
NameEY649764
Unique NameEY649764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.831e-13
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query:  286 IFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLITA 495
            I V TLTGK I L++E  D ++ +K K+++K+GIPP QQRLIFAGKQ++D +T ADY +      HL+ A
Sbjct:    3 IKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLA 72          

HSP 2 Score: 69.3218 bits (168), Expect = 3.442e-11
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 3
Query:   51 MQILVKTLTGKTITLEVESSDTIDNVKANIQDKEWIPPYQNMLIFAGKHLEDGRTLADYNI 233
            M I VKTLTGK I L++E +D ++ +K  +++KE IPP Q  LIFAGK + D +T ADY +
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKV 61          
BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.835e-12
Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  280 LHIFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLITA 495
            L++ V TLTGK I +++E  D +D +K ++++++GIPP QQRLI+ GKQL D +T  DY I      HL+ A
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLA 72          
BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.835e-12
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 1
Query:  286 IFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLITA 495
            I V TLTGK I +++E  D ID +K ++++K+GIPP QQRLI+AGKQL D +T  DY I      HL+ A
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLA 72          

HSP 2 Score: 69.3218 bits (168), Expect = 3.442e-11
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 3
Query:   57 ILVKTLTGKTITLEVESSDTIDNVKANIQDKEWIPPYQNMLIFAGKHLEDGRTLADYNI 233
            I VKTLTGK I +++E +DTID +K  +++KE IPP Q  LI+AGK L D +T  DY I
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAI 61          
BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.130e-12
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query:  286 IFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLITA 495
            I V TLTGK I +++E  D ++ +K ++++K+GIPP QQRLI++GKQ++D +T ADY I      HL+ A
Sbjct:    3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72          
BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.130e-12
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query:  286 IFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLITA 495
            I V TLTGK I +++E  D ++ +K ++++K+GIPP QQRLI++GKQ++D +T ADY I      HL+ A
Sbjct:    3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72          
BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.130e-12
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query:  286 IFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLITA 495
            I V TLTGK I +++E  D ++ +K ++++K+GIPP QQRLI++GKQ++D +T ADY I      HL+ A
Sbjct:    3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72          
BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.130e-12
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query:  286 IFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLITA 495
            I V TLTGK I +++E  D ++ +K ++++K+GIPP QQRLI++GKQ++D +T ADY I      HL+ A
Sbjct:    3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72          
BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.130e-12
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query:  286 IFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLITA 495
            I V TLTGK I +++E  D ++ +K ++++K+GIPP QQRLI++GKQ++D +T ADY I      HL+ A
Sbjct:    3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72          
BLAST of EY649764 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  286 IFVNTLTGKTITLEVESFDAIDNVKAKIQDKDGIPPDQQRLIFAGKQLDDGRTLADYNIHIE*TPHLITA 495
            I V TLTGK I ++++  D I  +K ++++K+GIPP QQRLIF GKQ+ D +  ++Y+I      HL+ A
Sbjct:    3 IKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLA 72          
The following BLAST results are available for this feature:
BLAST of EY649764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
NEDD8_CAEEL2.831e-1351.43NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RUB3_ORYSJ1.835e-1245.83NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
RUB2_ARATH1.835e-1251.43NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_RAT3.130e-1247.14NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT3.130e-1247.14NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE3.130e-1247.14NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN3.130e-1247.14NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN3.130e-1247.14NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
NEDD8_DICDI7.709e-1144.29NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-003-C05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649764 ID=EY649764; Name=EY649764; organism=Citrus sinensis; type=EST; length=921bp
ATCTTAACTTTTAATTCAATAAAAGGCCTCCTTCTGTTCTCTCTGTCAAG
ATGCAAATCTTAGTGAAAACTCTCACCGGCAAGACAATAACCCTTGAGGT
TGAAAGCTCCGACACCATAGATAATGTAAAAGCCAATATCCAAGACAAGG
AATGGATCCCACCATATCAAAATATGCTTATCTTTGCTGGTAAACATCTC
GAGGATGGTCGCACACTTGCTGACTATAATATCCATAAAGAATTAACCCT
CACACTTGGTCCTTCGACTTACGGGTGGTCTGCACATATTTGTAAATACC
CTCACTGGCAAGACTATTACTCTTGAAGTGGAAAGCTTCGACGCCATTGA
CAATGTGAAAGCCAAGATTCAAGACAAGGATGGGATCCCACCTGACCAAC
AAAGACTTATCTTTGCCGGTAAACAGCTCGATGATGGCCGCACACTTGCT
GATTATAACATACACATAGAGTAAACCCCGCACTTGATAACTGCGTCTGC
GAGGTGGTATGCAGATCTCTGTAAAGACCCTGACTGAGAAGACTATCACC
CTTGATGTGGAAAGCTCCGACACCATTGTCAATGTCATAGCCACAATCCA
TGATGATGTAGGGATCTCACCAGACCAACAAATGCTTATATATGCTGGTC
AACATCTAGAGGATGCACGCACACTGGCAGACTACATCATCCAGATGGAA
TCAGCATTCATGCTGTGCATAGTCTCAAGGGTGGCATGCATATATTTGAT
GAAACTCTGACCGGAAAGACTATCACTTACGAGCTGAAATCTCTGCACGA
TCGACATGTCATGCCAACATCAGGACATGATGGCATGCACTGATCACATT
AGTGATCTTTAGCGCAAACAGCTGATGATGTCTGCTCTNGCTGCTACACA
TTCAGAGAGTCATCTACTNGG
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