EY702834

Overview
NameEY702834
Unique NameEY702834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_CORA7 (Glucose-1-phosphate adenylyltransferase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=glgC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.996e-11
Identity = 43/173 (24.86%), Postives = 88/173 (50.87%), Query Frame = 1
Query:   79 GYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIY-TQPRYLPPSKMLDADVT-DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI-VNSDSVQEAARETDGYFIKSGIVTIIKDALI 588
            GYW D+GTI++F+ A++ +     P F+ Y+RS PI+ T     PP+K +   +   S++  GC++    + +SV+     +++GA +E ++++                     + IG+ + ++ AI+DKN  + D   I V+ +  +E  + ++G     G+V + K+  +
Sbjct:  258 GYWRDVGTIDSFYEAHMDMISVH-PIFNLYNRSWPIHSTDDSNFPPAKFVQNGIAQSSMVAPGCIVSGGTVRNSVLASDVHVADGATVEGSVILPG-------------------VRIGRGAVVRHAILDKNVVVSDGAIIGVDRERDEERFKVSEG-----GVVVVGKNVKV 405          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_ACIBL (Glucose-1-phosphate adenylyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glgC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.996e-11
Identity = 43/173 (24.86%), Postives = 85/173 (49.13%), Query Frame = 1
Query:   82 YWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD------VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI-VNSDSVQEAARETDGYFIKSGIVTIIKD 579
            YW D+GT++A+++ANL +     P F+ YD++ PI T  R  PP+K + A+        DSV+  GC++    + + V+     ++  + ++ ++L                      + +G++  I+R+IID++  I +   I  +++S ++    TD     SGI  + +D
Sbjct:  254 YWRDVGTLDAYYDANLDLV-SVAPVFNLYDKAWPIRTHQRQYPPAKFVFAEQGRMGTALDSVVSMGCIVSGGTVRNCVLSPDVRVNSFSEVDSSILFS-------------------HVNVGRHCRIRRSIIDRDVHIPEGTVIGYDTESDRQKYHVTD-----SGITVVTRD 401          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_MYCPA (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium paratuberculosis GN=glgC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.831e-11
Identity = 36/135 (26.67%), Postives = 70/135 (51.85%), Query Frame = 1
Query:   79 GYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA-DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 480
            GYW D+GT++AF++A++ +     P F+ Y++  PI  +   L P+K ++     +SV+G G +I    + +SV+     + +GAI+E +++M                       +G+ + ++ AI+DKN  +G
Sbjct:  258 GYWRDVGTLDAFYDAHMDLVSVH-PVFNLYNKRWPIRGESENLAPAKFVNGGSAQESVVGAGSIISAASVRNSVLSSNVVVDDGAIVEGSVIMPG-------------------ARVGRGAVVRHAILDKNVVVG 372          
The following BLAST results are available for this feature:
BLAST of EY702834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
GLGC_CORA75.996e-1124.86Glucose-1-phosphate adenylyltransferase OS=Coryneb... [more]
GLGC_ACIBL5.996e-1124.86Glucose-1-phosphate adenylyltransferase OS=Acidoba... [more]
GLGC_MYCPA7.831e-1126.67Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-G10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702834 ID=EY702834; Name=EY702834; organism=Citrus sinensis; type=EST; length=932bp
ACTGGTACCCTTCGGCCCGGTCCGGAATCCCACAAAAACCCCGCGTCCGG
GATGAGAGTGCCAACATATTTATATGATGGCTACTGGGAAGACATTGGAA
CAATTGAGGCTTTCTTCAACGCGAATCTGGGGATCACCAAAAAGCCAATT
CCGGATTTCAGCTTCTATGACCGGTCTGCTCCAATTTATACACAGCCTAG
ATATCTACCTCCTTCTAAGATGCTTGATGCTGATGTCACTGATAGTGTAA
TTGGTGAAGGCTGTGTGATTAAGAATTGCAAAATTCACCATTCTGTTGTT
GGGCTTCGATCTTGCATATCAGAAGGTGCAATTATCGAAGATACTTTACT
TATGGGAGCAGATTATTATGAGACAGACGCGGACAGGAGGTTTTTGGCTG
CAAAGGGTAGTGTTCCAATTGGTATTGGCAAGAATTCTCACATCAAGAGA
GCAATAATTGACAAAAATGCTCGAATTGGGGATAATGTGAAGATCGTCAA
CAGTGACAGTGTGCAAGAAGCAGCAAGGGAAACAGATGGATACTTCATCA
AGAGCGGGATTGTCACAATAATCAAGGATGCCTTGATTCCCAGTGGAACC
ATAATCTANACTGTCGTCTTCTCAGTTTCATCCCAAGCTGCGCTGCTGCG
GGTACCTTCCCCTCTATGCTCGAGAATGTCGTAATCTCAAGTCTGCTTCC
ACTTTACCTTTGGCCATCTTTTTGCTATAAGCTGTATATTTCCGGGCAGT
GTAATGTAATTATGAGAGGAATATACGACCTGGAAAAAGGGACTGCTGTA
AAGGTCTAGTTATGCAAAAATAAATCTTTCATTCTAATGTCTGCATCCAC
CTCCTTATCCCGGGGNATGGGACCTTGCCTTTTTTTGGGGAAATCCCCNT
TGGATTTGGTCCAAAAAAAAAAACANAAAAGA
back to top