EY702834

Overview
NameEY702834
Unique NameEY702834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_MYXXD (Glucose-1-phosphate adenylyltransferase OS=Myxococcus xanthus (strain DK 1622) GN=glgC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.601e-14
Identity = 55/195 (28.21%), Postives = 91/195 (46.67%), Query Frame = 1
Query:   55 RVPTYLYD--------------GYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD--------VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTII 573
            R P Y+YD              GYW D+G I+ ++ +N+ + +   P F+ Y+   PI+TQP   PP+K + AD          D+++ EGC+I    +  SV+  +  ++  + +ED+LL     +E               + IG+   I+RAIIDKN  I   + I   D V++  R    + +  G V +I
Sbjct:  233 RAPVYVYDFAQNEVPGQEAKERGYWRDVGNIDVYYQSNMDLVEVD-PTFNLYNDRWPIHTQPNNYPPAKFVFADEQNHRVGHAMDTLVAEGCIISGGSVRRSVLSPKVRVNSYSEVEDSLL-----FEN--------------VTIGRRCRIRRAIIDKNVEIPPGMTI-GFDPVEDRRR----FHVTPGGVVVI 402          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_BIFA0 (Glucose-1-phosphate adenylyltransferase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=glgC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.397e-14
Identity = 50/181 (27.62%), Postives = 87/181 (48.07%), Query Frame = 1
Query:   82 YWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA------DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 606
            YW D+GTI  F++A++ +    IP+F+ Y+   PIYT    LPP+K + A        TDS++  G ++   +IHHSV+     +   + + D++L                      + I + + + RAI+DKN  + +N   V  D   + AR   G+ + S  +T+     +P GT++
Sbjct:  262 YWRDVGTIRQFYDAHMDLISY-IPEFNLYNMEWPIYTSSGNLPPAKFVHAAGDRIGHATDSIVSPGVIVSGGEIHHSVISPNVRVHSWSQVNDSILFD-------------------NVEINRRARVNRAILDKNVVLTEN-STVGLDVEHDLAR---GFTVTSDGITV-----VPKGTVV 413          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_ACIC1 (Glucose-1-phosphate adenylyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glgC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.397e-14
Identity = 50/171 (29.24%), Postives = 89/171 (52.05%), Query Frame = 1
Query:   82 YWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML--DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 588
            YW D+GT++A+++A+  +     P F+ Y++  PIYT  R LPP+K++     V DS++ +G ++ + ++  SV+     +  GA+IE  +L+                     + IG+ + ++ AIIDKN  + D   I   D  ++A R T     + GIV I K+A++
Sbjct:  266 YWRDVGTLDAYYDAHQDLVSVH-PIFNLYNQDWPIYTHHRPLPPAKIVHDGTSVVDSLLSDGVIVADARVSRSVLSPSVYVDRGAVIEGCVLLD-------------------NVHIGRGAVVRNAIIDKNVVVPDGAAI-GVDPQRDAERFT---VSEGGIVVIAKNAVV 412          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_CLOTH (Glucose-1-phosphate adenylyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=glgC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.794e-14
Identity = 50/185 (27.03%), Postives = 95/185 (51.35%), Query Frame = 1
Query:   49 GMRVPTYLYDGYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML--DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 597
            G  +  Y ++GYW D+GTI+A++ +N+ +  + +P+F+ +D +  IYT P  + P+  +     V  S++ EGC+I    + +SV+     +SEGA I D+++M                       IG+N+ I + II +  ++G NV++   +++     E   +   SGI  + + A++P G
Sbjct:  231 GRSMWAYKFNGYWRDVGTIQAYWESNMDLISR-VPEFNLFDPAWKIYT-PNPVKPAHYIGPTGSVKKSIVAEGCMIYG-SVRNSVLFPGVYVSEGAEIVDSIVMSDSV-------------------IGENTQIYKCIIGEEVKVGKNVRMGIGENI---PNELKPHLYDSGITVVGEKAVVPDG 390          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_STRS7 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=glgC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.567e-14
Identity = 53/158 (33.54%), Postives = 83/158 (52.53%), Query Frame = 1
Query:   46 SGMRVPTYLYDGYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQ 516
            SG RV TY + GYW+D+GTIE+ + AN+    +        DRS  IY++    PP+ +  DA+V DS++ +G  I   K++HS++     + +GA ++D+ +M                     + IG+ + I RAII + A IGD+V I  S  VQ
Sbjct:  229 SGERVYTYNFKGYWKDVGTIESLWEANMEYIGEE-NALDSRDRSWKIYSKNHIAPPNFITEDAEVKDSLVVDGSFISG-KVNHSILSTNVQVRKGAEVKDSFIMS-------------------DVIIGEGARITRAIIGEGAVIGDHVVIDGSKDVQ 365          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_RHOSR (Glucose-1-phosphate adenylyltransferase OS=Rhodococcus sp. (strain RHA1) GN=glgC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.567e-14
Identity = 44/151 (29.14%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   79 GYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVT-DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR 528
            GYW D+GT++AF++A++ +     P F+ Y+R  PI  +   L P+K +   +  +SV+G GC++    + +SV+     +  GA +E ++LM                     + IGK + ++RAI+DKN  +GD  +I+  D  ++  R
Sbjct:  258 GYWRDVGTLDAFYDAHMDLVSVH-PIFNLYNRRWPIRGETENLAPAKFVQGGLAQESVVGAGCILSAATVRNSVLSSNVMVDSGATVEGSVLMPG-------------------VRIGKGAVVRRAILDKNVVVGDG-EIIGVDLERDKQR 387          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_RHOOB (Glucose-1-phosphate adenylyltransferase OS=Rhodococcus opacus (strain B4) GN=glgC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.567e-14
Identity = 44/151 (29.14%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   79 GYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVT-DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR 528
            GYW D+GT++AF++A++ +     P F+ Y+R  PI  +   L P+K +   +  +SV+G GC++    + +SV+     +  GA +E ++LM                     + IGK + ++RAI+DKN  +GD  +I+  D  ++  R
Sbjct:  258 GYWRDVGTLDAFYDAHMDLVSVH-PIFNLYNRRWPIRGETENLAPAKFVQGGLAQESVVGAGCILSAATVRNSVLSSNVMVDSGATVEGSVLMPG-------------------VRIGKGAVVRRAILDKNVVVGDG-EIIGVDLERDKQR 387          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_ANADE (Glucose-1-phosphate adenylyltransferase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=glgC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.567e-14
Identity = 53/181 (29.28%), Postives = 87/181 (48.07%), Query Frame = 1
Query:   79 GYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD--------VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 597
            GYW D+G+I+A+F AN+ +     P FS Y+   PI+T     PP+K +  +         TDS+I EGC+I    +HHS++  +  ++  A +E++++     +E               + IG++  I+RAIIDK+  I  +  I               +  +SGIV I K   I +G
Sbjct:  256 GYWRDVGSIDAYFQANMDLVAVD-PVFSLYNDEWPIFTVQYNYPPAKFVFNNERDNRIGRATDSLISEGCIISGAHVHHSILSPKVRVNSYATVEESIV-----FEN--------------VNIGRHCRIRRAIIDKHVDIPAHTTI----GFDHEKDRKHFHVTESGIVIIPKGMRIEAG 412          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_ARTAT (Glucose-1-phosphate adenylyltransferase OS=Arthrobacter aurescens (strain TC1) GN=glgC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.883e-14
Identity = 47/177 (26.55%), Postives = 89/177 (50.28%), Query Frame = 1
Query:   82 YWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD------VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFI-KSGIVTIIKDALIP 591
            YW D+GTI++F++A++ +   P+P F+ Y+   PIYT+    PP+K +  +        DS++  G V+    +  SV+   + ++ G+ ++D++LM                     + +G+ + IKRAI+DKN ++     I     +  A  +  GY + +SGI  + K  ++P
Sbjct:  262 YWRDVGTIDSFYDAHMDLIS-PVPIFNLYNSEWPIYTRQSISPPAKFVRGENNTVGTALDSIVASGVVVSGGIVEGSVLSNDAYVAAGSRVQDSVLMD-------------------KVRVGEGAVIKRAILDKNVKVPAGAAI----GLDPALDKARGYKVTESGITVLAKGQVVP 414          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_CLOCE (Glucose-1-phosphate adenylyltransferase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=glgC PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.291e-13
Identity = 54/188 (28.72%), Postives = 92/188 (48.94%), Query Frame = 1
Query:   49 GMRVPTYLYDGYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML--DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 606
            G  +  Y Y GYW D+GTI+AF+ +N+ +  + +P F+ +D    IYT P  + P+  +   A V  S+I EGC +    I +S++   + I EGA+I+D+++M                       + KN++I R+II + A IG+  ++     V     E       SGI  + + + IP+  +I
Sbjct:  231 GKSMWAYQYSGYWRDVGTIQAFWESNMDLVSR-VPQFNLFDPEWRIYT-PNPVKPAHYIASSACVKKSIIAEGCSVHGTVI-NSILFPGAYIEEGAVIQDSIIMSNS-------------------RVCKNAYINRSIISEQAIIGEKARLGEGPDV---PNEYKPGIYDSGITVVGEKSSIPADAVI 393          
The following BLAST results are available for this feature:
BLAST of EY702834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
GLGC_MYXXD2.601e-1428.21Glucose-1-phosphate adenylyltransferase OS=Myxococ... [more]
GLGC_BIFA03.397e-1427.62Glucose-1-phosphate adenylyltransferase OS=Bifidob... [more]
GLGC_ACIC13.397e-1429.24Glucose-1-phosphate adenylyltransferase OS=Acidoth... [more]
GLGC_CLOTH5.794e-1427.03Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_STRS77.567e-1433.54Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_RHOSR7.567e-1429.14Glucose-1-phosphate adenylyltransferase OS=Rhodoco... [more]
GLGC_RHOOB7.567e-1429.14Glucose-1-phosphate adenylyltransferase OS=Rhodoco... [more]
GLGC_ANADE7.567e-1429.28Glucose-1-phosphate adenylyltransferase OS=Anaerom... [more]
GLGC_ARTAT9.883e-1426.55Glucose-1-phosphate adenylyltransferase OS=Arthrob... [more]
GLGC_CLOCE1.291e-1328.72Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-G10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702834 ID=EY702834; Name=EY702834; organism=Citrus sinensis; type=EST; length=932bp
ACTGGTACCCTTCGGCCCGGTCCGGAATCCCACAAAAACCCCGCGTCCGG
GATGAGAGTGCCAACATATTTATATGATGGCTACTGGGAAGACATTGGAA
CAATTGAGGCTTTCTTCAACGCGAATCTGGGGATCACCAAAAAGCCAATT
CCGGATTTCAGCTTCTATGACCGGTCTGCTCCAATTTATACACAGCCTAG
ATATCTACCTCCTTCTAAGATGCTTGATGCTGATGTCACTGATAGTGTAA
TTGGTGAAGGCTGTGTGATTAAGAATTGCAAAATTCACCATTCTGTTGTT
GGGCTTCGATCTTGCATATCAGAAGGTGCAATTATCGAAGATACTTTACT
TATGGGAGCAGATTATTATGAGACAGACGCGGACAGGAGGTTTTTGGCTG
CAAAGGGTAGTGTTCCAATTGGTATTGGCAAGAATTCTCACATCAAGAGA
GCAATAATTGACAAAAATGCTCGAATTGGGGATAATGTGAAGATCGTCAA
CAGTGACAGTGTGCAAGAAGCAGCAAGGGAAACAGATGGATACTTCATCA
AGAGCGGGATTGTCACAATAATCAAGGATGCCTTGATTCCCAGTGGAACC
ATAATCTANACTGTCGTCTTCTCAGTTTCATCCCAAGCTGCGCTGCTGCG
GGTACCTTCCCCTCTATGCTCGAGAATGTCGTAATCTCAAGTCTGCTTCC
ACTTTACCTTTGGCCATCTTTTTGCTATAAGCTGTATATTTCCGGGCAGT
GTAATGTAATTATGAGAGGAATATACGACCTGGAAAAAGGGACTGCTGTA
AAGGTCTAGTTATGCAAAAATAAATCTTTCATTCTAATGTCTGCATCCAC
CTCCTTATCCCGGGGNATGGGACCTTGCCTTTTTTTGGGGAAATCCCCNT
TGGATTTGGTCCAAAAAAAAAAACANAAAAGA
back to top