EY702834

Overview
NameEY702834
Unique NameEY702834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_ANADF (Glucose-1-phosphate adenylyltransferase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=glgC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.756e-13
Identity = 51/174 (29.31%), Postives = 85/174 (48.85%), Query Frame = 1
Query:   79 GYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD--------VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 576
            GYW D+G+++A++ AN+ +     P FS Y+   PI+T     PP K +  +         TDS++ EGC+I     HH ++  +  I+  +++ED++L     +E               + IG++  I+RAI+DK+  I  N  I   D   +  R    +  +SGIV I K
Sbjct:  256 GYWRDVGSLDAYYQANMDLVDVD-PSFSLYNDRWPIFTAQHNFPPVKFVFNNQTEGRVGYATDSLVSEGCIISGGHAHHCILSPKVRINSYSLVEDSIL-----FEN--------------VNIGRHCKIRRAIVDKHVEIPANTTI-GYDLEHDRKR---FHVTESGIVVIPK 405          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBVY (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio vulnificus (strain YJ016) GN=glgC1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.756e-13
Identity = 50/175 (28.57%), Postives = 86/175 (49.14%), Query Frame = 1
Query:   82 YWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI-VNSDSVQEAARETDGYFIKSGIVTIIKDALI 588
            YW D+GTI+A++ A++ + K   P FS Y+R  P++T    LPP+   D+D     + DS++  G  ++  +I  SV+G RS I+    I +++L+G                    + +G+   ++R I+DK+  I    +I VN    ++    +D      GIV I K A +
Sbjct:  254 YWRDVGTIDAYWQAHMDLLKTDAP-FSLYNRKWPLHTYQPPLPPATFTDSDNGRVQIIDSLVCNGSYVRGSRIEKSVLGFRSNIASACDISESILLG-------------------DVKVGEGCVLRRVIVDKDVDIAPGTQIGVNLQEDKKVFHVSD-----DGIVVIPKGARV 403          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_LACLS (Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=glgC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.905e-13
Identity = 51/165 (30.91%), Postives = 77/165 (46.67%), Query Frame = 1
Query:   46 SGMRVPTYLYDGYWEDIGTIEAF---------FNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV 513
            +G  V  Y + GYW+D+GTI++           N  L IT K    +S  D SAP +   +           V ++++G+GC +    IH S++     + EG  IED+ +M   +                   IG+N  IK AII +NA+IGDNV+I+  D V
Sbjct:  229 AGENVFAYRFKGYWKDVGTIDSLHQSSMEFLDLNNELNITDKSWRIYSHNDISAPQFITEKL---------KVKNALVGDGCYVDGTVIH-SILSQNIHVQEGTTIEDSFIMSGTF-------------------IGENVTIKNAIIGENAKIGDNVEIIGEDEV 364          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBVU (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio vulnificus GN=glgC1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.905e-13
Identity = 50/175 (28.57%), Postives = 86/175 (49.14%), Query Frame = 1
Query:   82 YWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI-VNSDSVQEAARETDGYFIKSGIVTIIKDALI 588
            YW D+GTI+A++ A++ + K   P FS Y+R  P++T    LPP+   D+D     + DS++  G  ++  +I  SV+G RS I+    I +++L+G                    + +G+   ++R I+DK+  I    +I VN    ++    +D      GIV I K A +
Sbjct:  254 YWRDVGTIDAYWQAHMDLLKTDAP-FSLYNRKWPLHTYQPPLPPATFTDSDNGRVQIIDSLVCNGSYVRGSRIEKSVLGFRSNIASACDISESILLG-------------------DVKVGEGCVLRRVIVDKDVDIAPGTQIGVNLQEDKKIFHVSD-----DGIVVIPKGARV 403          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_BIFLO (Glucose-1-phosphate adenylyltransferase OS=Bifidobacterium longum GN=glgC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.406e-13
Identity = 49/181 (27.07%), Postives = 88/181 (48.62%), Query Frame = 1
Query:   82 YWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA------DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 606
            YW D+GTI+ F++A++ +    +P+F+ Y++  PIYT    LPP+K + A        TDS++  G ++   ++HHSV+     I   A I D++L                      + I + + + +AI+DKN  + +N   V  D+  + AR   G+ +    +T+     +P  TI+
Sbjct:  261 YWRDVGTIKQFYDAHMDLIAY-VPEFNLYNQDWPIYTMSGNLPPAKFVHAGRDRLGHATDSIVSPGVIVSGGEVHHSVLSPNVRIHSWAQIVDSVLFDG-------------------VVINRRARVYKAILDKNVVLTEN-STVGIDTEHDLAR---GFTVTPDGITV-----VPKNTIV 412          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_BIFLD (Glucose-1-phosphate adenylyltransferase OS=Bifidobacterium longum (strain DJO10A) GN=glgC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.406e-13
Identity = 49/181 (27.07%), Postives = 88/181 (48.62%), Query Frame = 1
Query:   82 YWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA------DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 606
            YW D+GTI+ F++A++ +    +P+F+ Y++  PIYT    LPP+K + A        TDS++  G ++   ++HHSV+     I   A I D++L                      + I + + + +AI+DKN  + +N   V  D+  + AR   G+ +    +T+     +P  TI+
Sbjct:  261 YWRDVGTIKQFYDAHMDLIAY-VPEFNLYNQDWPIYTMSGNLPPAKFVHAGRDRLGHATDSIVSPGVIVSGGEVHHSVLSPNVRIHSWAQIVDSVLFDG-------------------VVINRRARVYKAILDKNVVLTEN-STVGIDTEHDLAR---GFTVTPDGITV-----VPKNTIV 412          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_PROAC (Glucose-1-phosphate adenylyltransferase OS=Propionibacterium acnes GN=glgC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.366e-13
Identity = 45/165 (27.27%), Postives = 84/165 (50.91%), Query Frame = 1
Query:   82 YWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSK-MLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTII 573
            YW D+GTI+A+ +A++ +     P+F+ Y+   PI+T     P +K ++     D+++  GC+I    I+ +V+G R+ I   A ++++++M                     + IG N+ + RAI+DKN  + D  + V  D   + AR   G+ +  G VT++
Sbjct:  260 YWRDVGTIDAYHDAHMDLVSVE-PEFNLYNPDWPIWTMQEQAPGAKFVMRGSCDDTLVSAGCIISGTDIYRTVLGPRARIERWARVDESIVMNN-------------------VAIGSNATVHRAILDKNVIVPDGAQ-VGVDHDHDRAR---GFTVSPGGVTVV 400          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_BIFLI (Glucose-1-phosphate adenylyltransferase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=glgC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.366e-13
Identity = 49/181 (27.07%), Postives = 88/181 (48.62%), Query Frame = 1
Query:   82 YWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA------DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 606
            YW D+GTI+ F++A++ +    +P+F+ Y++  PIYT    LPP+K + A        TDS++  G ++   ++HHSV+     I   A I D++L                      + I + + + +AI+DKN  + +N   V  D+  + AR   G+ +    +T+     +P  TI+
Sbjct:  261 YWRDVGTIKQFYDAHMDLIAY-VPEFNLYNQDWPIYTMSGNLPPAKFVHAGRDRLGHATDSIVSPGVIVSGGEVHHSVLSPNVRIHSWAQIVDSVLFDG-------------------VIINRRARVYKAILDKNVVLTEN-STVGIDTEHDLAR---GFTVTPDGITV-----VPKNTIV 412          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_THENN (Glucose-1-phosphate adenylyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=glgC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.093e-12
Identity = 48/182 (26.37%), Postives = 96/182 (52.75%), Query Frame = 1
Query:   67 YLYDGYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTII-KDALIPSGTII 606
            + +DGYW D+GTI +++ ANL +   P+P F+ YD +   +T    +PP+ +  +A  + S+I EG  +   ++ +SV+     I +G +++++++M                       IG+N +++  I+ +N +IG+NVK+     V E A+      I +G++T++  ++ IP   +I
Sbjct:  236 FRFDGYWRDVGTIRSYWEANLELV-LPVPPFNLYDPNWRFFTHSEEMPPAYVAPEARTSTSLISEGAEVYG-EVTNSVIFQGVRIGKGTVVKNSVIM-------------------TRTEIGENCYLENVIVAENVKIGNNVKM----GVGEDAKSKLDPKIYTGLLTVVGMNSTIPDDVVI 392          
BLAST of EY702834 vs. ExPASy Swiss-Prot
Match: GLGC_NITOC (Glucose-1-phosphate adenylyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.093e-12
Identity = 46/175 (26.29%), Postives = 82/175 (46.86%), Query Frame = 1
Query:   79 GYWEDIGTIEAFFNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD------VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDAL 585
            GYW D+GT++AF+NANL +     P+ + YD   PI+T    LPP+K +  +        DS++  GC+I    I HS++     +     +  ++++                     + IGK+ HI++AI+DK   + D   ++  D  ++  R    Y  + G+V +  + L
Sbjct:  265 GYWRDVGTVDAFWNANLELIGVS-PELNLYDEDWPIWTYQAQLPPAKFIFDNEDRRGMAVDSMVSGGCIIAGAWIGHSLLFSNVWVQSHTEVASSVIL-------------------PDVKIGKHCHIRKAILDKGCNVPDGT-VIGEDLEEDKRR---FYVTEEGVVLVTPEML 415          
The following BLAST results are available for this feature:
BLAST of EY702834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
GLGC_ANADF3.756e-1329.31Glucose-1-phosphate adenylyltransferase OS=Anaerom... [more]
GLGC1_VIBVY3.756e-1328.57Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_LACLS4.905e-1330.91Glucose-1-phosphate adenylyltransferase OS=Lactoco... [more]
GLGC1_VIBVU4.905e-1328.57Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_BIFLO6.406e-1327.07Glucose-1-phosphate adenylyltransferase OS=Bifidob... [more]
GLGC_BIFLD6.406e-1327.07Glucose-1-phosphate adenylyltransferase OS=Bifidob... [more]
GLGC_PROAC8.366e-1327.27Glucose-1-phosphate adenylyltransferase OS=Propion... [more]
GLGC_BIFLI8.366e-1327.07Glucose-1-phosphate adenylyltransferase OS=Bifidob... [more]
GLGC_THENN1.093e-1226.37Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_NITOC1.093e-1226.29Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-G10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702834 ID=EY702834; Name=EY702834; organism=Citrus sinensis; type=EST; length=932bp
ACTGGTACCCTTCGGCCCGGTCCGGAATCCCACAAAAACCCCGCGTCCGG
GATGAGAGTGCCAACATATTTATATGATGGCTACTGGGAAGACATTGGAA
CAATTGAGGCTTTCTTCAACGCGAATCTGGGGATCACCAAAAAGCCAATT
CCGGATTTCAGCTTCTATGACCGGTCTGCTCCAATTTATACACAGCCTAG
ATATCTACCTCCTTCTAAGATGCTTGATGCTGATGTCACTGATAGTGTAA
TTGGTGAAGGCTGTGTGATTAAGAATTGCAAAATTCACCATTCTGTTGTT
GGGCTTCGATCTTGCATATCAGAAGGTGCAATTATCGAAGATACTTTACT
TATGGGAGCAGATTATTATGAGACAGACGCGGACAGGAGGTTTTTGGCTG
CAAAGGGTAGTGTTCCAATTGGTATTGGCAAGAATTCTCACATCAAGAGA
GCAATAATTGACAAAAATGCTCGAATTGGGGATAATGTGAAGATCGTCAA
CAGTGACAGTGTGCAAGAAGCAGCAAGGGAAACAGATGGATACTTCATCA
AGAGCGGGATTGTCACAATAATCAAGGATGCCTTGATTCCCAGTGGAACC
ATAATCTANACTGTCGTCTTCTCAGTTTCATCCCAAGCTGCGCTGCTGCG
GGTACCTTCCCCTCTATGCTCGAGAATGTCGTAATCTCAAGTCTGCTTCC
ACTTTACCTTTGGCCATCTTTTTGCTATAAGCTGTATATTTCCGGGCAGT
GTAATGTAATTATGAGAGGAATATACGACCTGGAAAAAGGGACTGCTGTA
AAGGTCTAGTTATGCAAAAATAAATCTTTCATTCTAATGTCTGCATCCAC
CTCCTTATCCCGGGGNATGGGACCTTGCCTTTTTTTGGGGAAATCCCCNT
TGGATTTGGTCCAAAAAAAAAAACANAAAAGA
back to top