EY649741

Overview
NameEY649741
Unique NameEY649741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649741 vs. ExPASy Swiss-Prot
Match: FDFT_YEAST (Squalene synthetase OS=Saccharomyces cerevisiae GN=ERG9 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.471e-35
Identity = 83/219 (37.90%), Postives = 122/219 (55.71%), Query Frame = 1
Query:   22 MGSLAAVLRHPYDLYPLLKLKMASRQAEK--QIPPEPHWAFCYSMLHKVSRSFALVIQQLGTDLINAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYK--VLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDEYCYYVAGLVGLCLSKLFYAS--GTEDL-APDSLSNSMGLFSQ 639
            MG L  +  HP ++   LKLK               P+   C+ +L+  SRSFA VI++L  +L N V +FYL+LRALDT+EDD SI  D+K+ +L  FH  +   +W F     + K   ++  F  +   F +L   YQ+ I++IT++MG GMA +I  E      ++++ DYD YC+YVAGLVG  L++L   +    E L + + L  SMGLF Q
Sbjct:    1 MGKLLQLALHPVEMKAALKLKFCRTPLFSIYDQSTSPYLLHCFELLNLTSRSFAAVIRELHPELRNCVTLFYLILRALDTIEDDMSIEHDLKIDLLRHFHEKLLLTKWSFDGNAPDVKDRAVLTDFESILIEFHKLKPEYQEVIKEITEKMGNGMADYILDENYNLNGLQTVHDYDVYCHYVAGLVGDGLTRLIVIAKFANESLYSNEQLYESMGLFLQ 219          

HSP 2 Score: 34.6538 bits (78), Expect = 2.471e-35
Identity = 16/32 (50.00%), Postives = 19/32 (59.38%), Query Frame = 3
Query:  624 GFIFSNTYIIRDYLEDINEIPECRMFWPREIW 719
            G     T IIRDY ED+    + R FWP+EIW
Sbjct:  215 GLFLQKTNIIRDYNEDL---VDGRSFWPKEIW 243          
BLAST of EY649741 vs. ExPASy Swiss-Prot
Match: FDFT_CANAL (Squalene synthetase OS=Candida albicans GN=ERG9 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.890e-34
Identity = 85/221 (38.46%), Postives = 127/221 (57.47%), Query Frame = 1
Query:   22 MGSLAAVLRHPYDLYPLLKLKMASRQA---EKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGTDLINAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHF-SCGTKEY-KVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDEYCYYVAGLVGLCLSKLFYAS--GTEDLAPDSL--SNSMGLFSQ 639
            MG    +L HP +L  +++L    RQ     K+   +     CY +L+  SRSFA VI++L  +L +AV IFYLVLRALDT+EDD +I + +K+P+L  F   +  + W F   G  E  + ++ +F  +   +  L   YQD I+ IT +MG GMA +I  E      V +++DY+ YC+YVAGLVG  L+ LF  +  G + L  ++   ++SMGLF Q
Sbjct:    1 MGKFLQLLSHPTELKAVIQL-FGFRQPLHPGKRDVNDKELGRCYELLNLTSRSFAAVIEELHPELRDAVMIFYLVLRALDTIEDDMTIKSSIKIPLLREFDTKLNTKNWTFDGYGPNEKDRTVLVEFDKILNVYHRLKPQYQDIIKSITFKMGNGMADYILDEEFNVYGVATVEDYNLYCHYVAGLVGEGLTNLFVLANFGDKTLTENNFAKADSMGLFLQ 220          

HSP 2 Score: 36.5798 bits (83), Expect = 5.890e-34
Identity = 17/32 (53.12%), Postives = 19/32 (59.38%), Query Frame = 3
Query:  624 GFIFSNTYIIRDYLEDINEIPECRMFWPREIW 719
            G     T IIRDY ED+ +    R FWPREIW
Sbjct:  216 GLFLQKTNIIRDYHEDLQD---GRSFWPREIW 244          
BLAST of EY649741 vs. ExPASy Swiss-Prot
Match: FDFT_YARLI (Squalene synthetase OS=Yarrowia lipolytica GN=SQS1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.271e-33
Identity = 85/222 (38.29%), Postives = 126/222 (56.76%), Query Frame = 1
Query:   22 MGSLAAVLRHPYDL-----YPLLKLKMASRQAEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGTDLINAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHF--SCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDEYCYYVAGLVGLCLSKLFYAS--GTEDLAPD-SLSNSMGLFSQ 639
            MG L  +L HP +L     Y L +  +  R   K+         CY +L   SRSFA VI++L  ++ +AV +FYL+LRALDT+EDD ++  D+K+PIL  F + +    W F  S   +  +V++ +F  V T F +L   YQ+ I DIT RMG GMA ++  +      V++I  YD YC++VAG+VG  L+++   +  GT+ L  +  L  SMGLF Q
Sbjct:    1 MGKLIELLLHPSELSAAIHYKLWRQPLHPRDLSKE---STELRRCYELLDVCSRSFAAVIRELHPEVRDAVMLFYLILRALDTIEDDMTLSRDIKIPILRDFTKCMKTPGWKFTDSDPNERDRVVLQEFPVVMTEFNKLKPKYQEVIYDITDRMGNGMADYVIDDDFNNNGVDTIAAYDLYCHHVAGIVGEGLTRITILAGFGTDVLHENPRLQESMGLFLQ 219          

HSP 2 Score: 34.6538 bits (78), Expect = 8.271e-33
Identity = 17/32 (53.12%), Postives = 18/32 (56.25%), Query Frame = 3
Query:  624 GFIFSNTYIIRDYLEDINEIPECRMFWPREIW 719
            G       IIRDY EDI+     R FWPREIW
Sbjct:  215 GLFLQKVNIIRDYREDIDVN---RAFWPREIW 243          
BLAST of EY649741 vs. ExPASy Swiss-Prot
Match: FDFT_USTMA (Squalene synthetase OS=Ustilago maydis GN=ERG9 PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.961e-31
Identity = 77/178 (43.26%), Postives = 106/178 (59.55%), Query Frame = 1
Query:  139 CYSMLHKVSRSFALVIQQLGTDLINAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHF--SCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFI------CKEVESIDDYDEYCYYVAGLVGLCLSKLFYASGTED--LAPD-SLSNSMGLFSQ 639
            C+  L   SRSFA VI++L  +L   +C+FYLVLRALDTVEDD +IP   K+P+L+ F++++    W+F  S   ++ + L+ +F  V   +  L  GY+  I DIT +MGAGMA +I        +V     +D YC++VAGLVG  LS+LF  S  E   L     LSN MGLF Q
Sbjct:   50 CWGFLDLTSRSFAAVIKELKGELSRVICLFYLVLRALDTVEDDMTIPAQRKIPLLVNFYKYLEQPGWNFTESGPNEKDRQLLVEFDKVIAEYQLLDVGYKTVISDITAKMGAGMASYIELSAKGPLKVAMWKHFDLYCHFVAGLVGEGLSRLFSESKLERPWLGHQLELSNHMGLFLQ 227          

HSP 2 Score: 32.7278 bits (73), Expect = 1.961e-31
Identity = 15/32 (46.88%), Postives = 17/32 (53.12%), Query Frame = 3
Query:  624 GFIFSNTYIIRDYLEDINEIPECRMFWPREIW 719
            G     T IIRDY ED     E R FWP++ W
Sbjct:  223 GLFLQKTNIIRDYAEDCE---EGRYFWPQQCW 251          
BLAST of EY649741 vs. ExPASy Swiss-Prot
Match: FDFT_PICJA (Squalene synthetase OS=Pichia jadinii GN=ERG9 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.991e-31
Identity = 85/219 (38.81%), Postives = 125/219 (57.08%), Query Frame = 1
Query:   22 MGSLAAVLRHPYDLYPLLKLKMASRQAEKQIPPEPHWAF--CYSMLHKVSRSFALVIQQLGTDLINAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYK--VLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDEYCYYVAGLVGLCLSKLFYAS--GTEDLAPD-SLSNSMGLFSQ 639
            MG L  +  HP +L  +++ K+  +    + P         CY +L+  SRSFA VI++L  +L N + +FYLVLRALDTVE D SI   VK+P+L  FH  +  ++W F   +   K   ++ +F  +   + EL   YQ  I++IT++MG GMA +I  E      + +I+DYD YCYYVAGLVG  L++L   +  G  +L+ +  L  SMGLF Q
Sbjct:    1 MGKLLQLALHPDELASIVQFKLFRKNENARNPATESAELIRCYELLNLTSRSFAAVIEELHPELRNVIMVFYLVLRALDTVEVDMSIENSVKLPVLRQFHEKLDTKDWTFDGNSPNEKDRCVLVEFDRILGQYHELKPQYQKVIKEITEKMGNGMADYIENENFNSNGLLTIEDYDLYCYYVAGLVGDGLTQLIVLAKFGNSELSVNKQLFKSMGLFLQ 219          
BLAST of EY649741 vs. ExPASy Swiss-Prot
Match: FDFT_CANGA (Squalene synthetase OS=Candida glabrata GN=ERG9 PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.815e-28
Identity = 84/222 (37.84%), Postives = 120/222 (54.05%), Query Frame = 1
Query:   22 MGSLAAVLRHPYDLYPLLKLKMASRQ--AEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGTDLINAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYK--VLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDEYCYYVAGLVGLCLSKLFYAS--GTEDLAPD----SLSNSMGLFSQ 639
            MG +  +  HP +L   LKLK   +   +       P    CY +L+  SRSFA VI +L  +L N + +FYL+LRALDTVEDD +I   +KV +L  F   +   +W F     + K  V++ +F  +   + +L   YQ  I+ IT  MG GMA +I  E      V+++ DYD+YC+YVAGLVG  L++L   +  G++DL        L  SMGLF Q
Sbjct:    1 MGKVLDLALHPLELRAALKLKFIRQPLFSTNDTRATPQLERCYELLNLTSRSFAAVIMELHPELRNVIMVFYLILRALDTVEDDMTIDPQLKVKVLREFDSKLDTTDWSFDGNDLKEKDRVVLTEFPCILGEYHKLKPEYQKVIKRITGLMGNGMADYILDENFNLNGVQTVKDYDKYCHYVAGLVGDGLTELIVLAGFGSDDLYHGKNSFQLYESMGLFLQ 222          
BLAST of EY649741 vs. ExPASy Swiss-Prot
Match: FDFT_NEUCR (Probable squalene synthetase OS=Neurospora crassa GN=erg-9 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.020e-25
Identity = 75/215 (34.88%), Postives = 112/215 (52.09%), Query Frame = 1
Query:   34 AAVLRHPYDLYPLLKLKMASRQAEKQIPPEPHWA--FCYSMLHKVSRSFALVIQQLGTDLINAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG--TKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDEYCYYVAGLVGLCLSKLFYASGTED---LAPDSLSNSMGLFSQ 639
            A  L HP  L  +++ K+      ++ P +       C+  L   SRSF+ VIQ+L  +L+  +C+FYLVLR LDT+EDD +I    K P+L  F   +    W F+     ++ + L+  F  V     ++ K Y D I +IT +MG GMA +          V +I++Y+ YC+YVAGLVG  L++LF  S   +   L    L+ SMG F Q
Sbjct:    8 AYFLLHPNQLRSIVQWKVWHEPVHRRDPSKETETEKACFRHLELTSRSFSAVIQELNPELLMPICLFYLVLRGLDTIEDDMTIDLAKKEPLLREFADLMEIDGWTFTENGPNEKDRELLVHFDDVIAELKKVKKPYYDIIREITVKMGNGMADYALNAEHNTNGVNTIEEYELYCHYVAGLVGEGLTRLFVESNLANPALLERMELTESMGQFLQ 222          

HSP 2 Score: 26.9498 bits (58), Expect = 3.020e-25
Identity = 14/32 (43.75%), Postives = 16/32 (50.00%), Query Frame = 3
Query:  624 GFIFSNTYIIRDYLEDINEIPECRMFWPREIW 719
            G     T IIRD  ED     + R FWP+ IW
Sbjct:  218 GQFLQKTNIIRDIHEDY---VDKRRFWPKTIW 246          
The following BLAST results are available for this feature:
BLAST of EY649741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
FDFT_YEAST2.471e-3537.90Squalene synthetase OS=Saccharomyces cerevisiae GN... [more]
FDFT_CANAL5.890e-3438.46Squalene synthetase OS=Candida albicans GN=ERG9 PE... [more]
FDFT_YARLI8.271e-3338.29Squalene synthetase OS=Yarrowia lipolytica GN=SQS1... [more]
FDFT_USTMA1.961e-3143.26Squalene synthetase OS=Ustilago maydis GN=ERG9 PE=... [more]
FDFT_PICJA2.991e-3138.81Squalene synthetase OS=Pichia jadinii GN=ERG9 PE=3... [more]
FDFT_CANGA1.815e-2837.84Squalene synthetase OS=Candida glabrata GN=ERG9 PE... [more]
FDFT_NEUCR3.020e-2534.88Probable squalene synthetase OS=Neurospora crassa ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-003-A03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649741 ID=EY649741; Name=EY649741; organism=Citrus sinensis; type=EST; length=912bp
GTTTACAAATAAAAATAAAAAATGGGGAGTTTGGCAGCGGTGTTGAGGCA
CCCATATGATCTTTACCCGTTATTGAAGCTGAAAATGGCATCGAGGCAAG
CTGAAAAGCAGATCCCACCTGAGCCTCACTGGGCTTTTTGTTACTCTATG
CTTCATAAGGTCTCCAGAAGTTTCGCTCTCGTTATTCAACAGCTCGGTAC
TGACCTCATAAACGCCGTTTGCATATTTTATTTGGTTCTTCGAGCCCTCG
ACACTGTTGAGGATGACACCAGCATACCTACAGATGTCAAAGTGCCTATT
CTGATAGCTTTTCATCGTCATGTTTATGACCGTGAATGGCATTTTTCTTG
TGGTACAAAGGAATACAAAGTGCTCATGGATCAATTTCATCACGTTTCAA
CTGCTTTTCTGGAGCTTGGAAAAGGTTATCAGGATGCAATTGAAGATATA
ACCAAAAGAATGGGTGCTGGGATGGCAAAATTCATTTGCAAAGAGGTAGA
ATCGATCGATGACTATGATGAATATTGTTACTATGTAGCAGGACTTGTTG
GATTATGTCTGTCCAAGCTTTTCTATGCCTCTGGGACAGAAGATCTGGCT
CCAGATAGTCTTTCCAACTCGATGGGTTTATTTTCTCAAATACATATATC
ATTCGAGATTATCTGGAAGATATTAATGAGATACCCGAGTGTCGCATGTT
TTGGCCTCGTGAGATCTGGAGAAATATGTAAATAAACTGAGGACTAAAAT
TTGAGGAAACTCTGACAAGCAGTACATTGCTTGATGATATGTCACCATGC
TCTGATCATGGGGAGATGTTTGAGTACAGGCTGCTTTAAGGATATGCTTA
TTNCGATCTGGCTTCCCTCAATCATGCTTGGNACACTACTATGCTCACAT
AATGAGTCTCAA
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