EY649735

Overview
NameEY649735
Unique NameEY649735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4_BOVIN (40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3)

HSP 1 Score: 287.345 bits (734), Expect = 7.393e-77
Identity = 138/188 (73.40%), Postives = 156/188 (82.98%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4X_RAT (40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 7.393e-77
Identity = 138/188 (73.40%), Postives = 156/188 (82.98%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4X_MOUSE (40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 7.393e-77
Identity = 138/188 (73.40%), Postives = 156/188 (82.98%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4X_MESAU (40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 7.393e-77
Identity = 138/188 (73.40%), Postives = 156/188 (82.98%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4X_MACFU (40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3)

HSP 1 Score: 287.345 bits (734), Expect = 7.393e-77
Identity = 138/188 (73.40%), Postives = 156/188 (82.98%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4X_HUMAN (40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 7.393e-77
Identity = 138/188 (73.40%), Postives = 156/188 (82.98%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4X_FELCA (40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 7.393e-77
Identity = 138/188 (73.40%), Postives = 156/188 (82.98%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4X_CERAE (40S ribosomal protein S4, X isoform OS=Cercopithecus aethiops GN=RPS4X PE=2 SV=3)

HSP 1 Score: 287.345 bits (734), Expect = 7.393e-77
Identity = 138/188 (73.40%), Postives = 156/188 (82.98%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.809e-76
Identity = 141/219 (64.38%), Postives = 170/219 (77.63%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRDVLESL-RTEKA*G*L*NYPLQDALGHEFA 749
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV+ I+ QR + VD KVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ V  G K +PY+ T+DGRTIRYPDPLIK ND+I+LD+ T KI +FIKF+ GN+ M+TGGRN   + ++   E+  G      ++D+ GH FA
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA 219          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4X_DANRE (40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2 SV=3)

HSP 1 Score: 285.419 bits (729), Expect = 2.809e-76
Identity = 142/219 (64.84%), Postives = 169/219 (77.17%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRDVLESL-RTEKA*G*L*NYPLQDALGHEFA 749
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYP GFMDVVSI KT ENFRL+YD KGRF +H I +EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DL+T KIT+FIKF+ GN+ MVTGG N   +  +   EK  G      ++D++G+ FA
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPTGFMDVVSIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVRKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTIRIDLDTGKITDFIKFETGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDSIGNSFA 219          
The following BLAST results are available for this feature:
BLAST of EY649735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_BOVIN7.393e-7773.4040S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=... [more]
RS4X_RAT7.393e-7773.4040S ribosomal protein S4, X isoform OS=Rattus norv... [more]
RS4X_MOUSE7.393e-7773.4040S ribosomal protein S4, X isoform OS=Mus musculu... [more]
RS4X_MESAU7.393e-7773.4040S ribosomal protein S4, X isoform OS=Mesocricetu... [more]
RS4X_MACFU7.393e-7773.4040S ribosomal protein S4, X isoform OS=Macaca fusc... [more]
RS4X_HUMAN7.393e-7773.4040S ribosomal protein S4, X isoform OS=Homo sapien... [more]
RS4X_FELCA7.393e-7773.4040S ribosomal protein S4, X isoform OS=Felis catus... [more]
RS4X_CERAE7.393e-7773.4040S ribosomal protein S4, X isoform OS=Cercopithec... [more]
RS4_BOMMO2.809e-7664.3840S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE... [more]
RS4X_DANRE2.809e-7664.8440S ribosomal protein S4, X isoform OS=Danio rerio... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649735 ID=EY649735; Name=EY649735; organism=Citrus sinensis; type=EST; length=871bp
CTAGCATCGCTTGTGAGTGCATTTCACTTCGTTTTTGTTTTGCAGGACTG
TGACACGCCGTTGGCGAATCCAAGCTCAGGCTCACGAACACAAAAATGGC
GAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCACTGGA
TGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTGGGCCA
CACAAATCAAGGGAGTGTTTGCCCTTAATTCTTATCTTACGTAACCGCTT
GAAGTATGCTCTTACATACCGAGAAGTCATTGCAATTTTGATGCAACGAC
ATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAGACTTACCCTGCTGGG
TTCATGGATGTTGTGTCAATTCCAAAGACGAATGAGAACTTCCGTCTCCT
TTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAGGAGG
CTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAAGGGA
ATCCCTTACATCAACACTTATGATGGGAGGACTATTCGCTACCCAGACCC
ACTCATCAAGGCCAATGATACCATCAAGCTGGACCTGGAGACTAACAAGA
TCACCGAGTTCATCAAGTTTGATGTTGGAAATGTTGTGATGGTGACTGGA
GGGAGAAACAGAGACGTGTTGGAATCATTAAGAACAGAGAAAGCATAAGG
GTAGCTTTGAAACTATCCACTCCAGGATGCTCTTGGTCATGAGTTTGCAC
TCGTCTTGGAAATGTGTCACATTGGCAGGGTACAAAGCATGGTTTCTNCT
TCCAGGGCAAGGTANTAACTTNCATCATTGAGGAGCAGGNANANACAGCC
CTGGCGACTTAGCAGCCGCCA
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