EY649735

Overview
NameEY649735
Unique NameEY649735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.717e-15
Identity = 50/183 (27.32%), Postives = 89/183 (48.63%), Query Frame = 3
Query:  108 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPD-PLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGG 653
            +  H KRL  PK W +++   A+  K ++GPH   E +PL+++LR+ L Y  + +E    L Q  +L++    +D+  P G  D+++  +  E +R+  D  GR  L  I ++ A  KL K+        G   ++ +DG T+   D      ND+I +  +  +I     ++ G +V    G
Sbjct:    1 MTNHQKRLAVPKSWPVERKEEAYTTKAAAGPH-GEEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVEDATAYDTNDSIVVSNDGEEIVAHFTYEEGALVTAVSG 182          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 6.161e-15
Identity = 50/183 (27.32%), Postives = 89/183 (48.63%), Query Frame = 3
Query:  108 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGG 653
            +  H KRL+ P  W +++    F  K  +GPH     +PL+++LR+ L YA   +E    L + +VL++ K  +D+  P G  D+++  +  E +R+     GR  L +I  + A+ KL K+ +      G   +  +DG T I   D    A D+I +  E  ++    +++ G +V    G
Sbjct:    1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDG 182          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.373e-14
Identity = 55/202 (27.23%), Postives = 100/202 (49.50%), Query Frame = 3
Query:   81 LTNTKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRDVLESLRT 686
            +T TK+    +K LK     + W ++ L G+         HK    +PL++ LR+ LK     RE+  IL    V+VD KV  ++    GFMD +++  +  ++ + YD KG+  +     E    KL +V+   + + G   I+ +DG T+      IK  D++ + +   +I + +KF  GN V +TGG +   + ++++
Sbjct:    2 ITKTKIMMAPRK-LKIARKSRFWAVNSLPGS---------HKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKS 191          
The following BLAST results are available for this feature:
BLAST of EY649735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_NATPD4.717e-1527.3230S ribosomal protein S4e OS=Natronomonas pharaoni... [more]
RS4E_HALMA6.161e-1527.3230S ribosomal protein S4E OS=Haloarcula marismortu... [more]
RS4E_PICTO1.373e-1427.2330S ribosomal protein S4e OS=Picrophilus torridus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649735 ID=EY649735; Name=EY649735; organism=Citrus sinensis; type=EST; length=871bp
CTAGCATCGCTTGTGAGTGCATTTCACTTCGTTTTTGTTTTGCAGGACTG
TGACACGCCGTTGGCGAATCCAAGCTCAGGCTCACGAACACAAAAATGGC
GAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCACTGGA
TGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTGGGCCA
CACAAATCAAGGGAGTGTTTGCCCTTAATTCTTATCTTACGTAACCGCTT
GAAGTATGCTCTTACATACCGAGAAGTCATTGCAATTTTGATGCAACGAC
ATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAGACTTACCCTGCTGGG
TTCATGGATGTTGTGTCAATTCCAAAGACGAATGAGAACTTCCGTCTCCT
TTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAGGAGG
CTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAAGGGA
ATCCCTTACATCAACACTTATGATGGGAGGACTATTCGCTACCCAGACCC
ACTCATCAAGGCCAATGATACCATCAAGCTGGACCTGGAGACTAACAAGA
TCACCGAGTTCATCAAGTTTGATGTTGGAAATGTTGTGATGGTGACTGGA
GGGAGAAACAGAGACGTGTTGGAATCATTAAGAACAGAGAAAGCATAAGG
GTAGCTTTGAAACTATCCACTCCAGGATGCTCTTGGTCATGAGTTTGCAC
TCGTCTTGGAAATGTGTCACATTGGCAGGGTACAAAGCATGGTTTCTNCT
TCCAGGGCAAGGTANTAACTTNCATCATTGAGGAGCAGGNANANACAGCC
CTGGCGACTTAGCAGCCGCCA
back to top