EY649735

Overview
NameEY649735
Unique NameEY649735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4_XENLA (40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4)

HSP 1 Score: 284.648 bits (727), Expect = 4.792e-76
Identity = 137/188 (72.87%), Postives = 155/188 (82.45%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR    G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITSEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4_CHICK (40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 4.792e-76
Identity = 137/188 (72.87%), Postives = 156/188 (82.98%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 283.878 bits (725), Expect = 8.174e-76
Identity = 135/188 (71.81%), Postives = 156/188 (82.98%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            MARG KKHLKRL AP HW+LDKL G +AP+PS+GPHK RE LPLI+ LRNRLKYAL  REV AILMQRHV VD KVRTD TYPAGFMDV+++  TNENFRL+YD KGRF +H I DEEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDP IK NDT+K+DL + KIT+FIKFD G +V VTGGRN
Sbjct:    1 MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRN 188          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 283.878 bits (725), Expect = 8.174e-76
Identity = 137/188 (72.87%), Postives = 155/188 (82.45%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR    G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 8.174e-76
Identity = 139/219 (63.47%), Postives = 171/219 (78.08%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRDVLESL-RTEKA*G*L*NYPLQDALGHEFA 749
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV+ I+ QR + VD KVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ V  G K +P++ T+DGRTIRYPDPLIK ND+++LD+ T+KI +FIKF+ GN+ M+TGGRN   + ++   E+  G      ++D+ GH FA
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTVHRITPEEAKYKLCKVKRVSTGPKNVPFLVTHDGRTIRYPDPLIKVNDSVQLDIATSKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA 219          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.068e-75
Identity = 143/219 (65.30%), Postives = 167/219 (76.26%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRDVLESL-RTEKA*G*L*NYPLQDALGHEFA 749
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VD KVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H I  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LETNKI  FIKFD    VMVTGGRN   + ++   E   G      ++DAL  EFA
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFA 219          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.068e-75
Identity = 143/219 (65.30%), Postives = 167/219 (76.26%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRDVLESL-RTEKA*G*L*NYPLQDALGHEFA 749
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VD KVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H I  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LETNKI  FIKFD    VMVTGGRN   + ++   E   G      ++DAL  EFA
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFA 219          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 1.068e-75
Identity = 143/219 (65.30%), Postives = 167/219 (76.26%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRDVLESL-RTEKA*G*L*NYPLQDALGHEFA 749
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VD KVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H I  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LETNKI  FIKFD    VMVTGGRN   + ++   E   G      ++DAL  EFA
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFA 219          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 281.182 bits (718), Expect = 5.298e-75
Identity = 142/219 (64.84%), Postives = 168/219 (76.71%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRDVLESL-RTEKA*G*L*NYPLQDALGHEFA 749
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +    KGIP++ T+D RTIRYPDPLIK NDT++++LET KIT+FIKFD GN+ MVTGG N   +  +   EK  G      ++DA G+ FA
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFA 219          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 281.182 bits (718), Expect = 5.298e-75
Identity = 143/219 (65.30%), Postives = 166/219 (75.80%), Query Frame = 3
Query:   96 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRDVLESL-RTEKA*G*L*NYPLQDALGHEFA 749
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYP GFMDV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR    G K IP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N   +  +   EK  G      ++DA G+ FA
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDTTYPVGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFA 219          
The following BLAST results are available for this feature:
BLAST of EY649735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_XENLA4.792e-7672.8740S ribosomal protein S4 OS=Xenopus laevis GN=rps4... [more]
RS4_CHICK4.792e-7672.8740S ribosomal protein S4 OS=Gallus gallus GN=RPS4 ... [more]
RS4_YEAST8.174e-7671.8140S ribosomal protein S4 OS=Saccharomyces cerevisi... [more]
RS4_XENTR8.174e-7672.8740S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]
RS4_SPOFR8.174e-7663.4740S ribosomal protein S4 OS=Spodoptera frugiperda ... [more]
RS4C_SCHPO1.068e-7565.3040S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]
RS4B_SCHPO1.068e-7565.3040S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4A_SCHPO1.068e-7565.3040S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4Y1_MONDO5.298e-7564.8440S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4X_MONDO5.298e-7565.3040S ribosomal protein S4, X isoform OS=Monodelphis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649735 ID=EY649735; Name=EY649735; organism=Citrus sinensis; type=EST; length=871bp
CTAGCATCGCTTGTGAGTGCATTTCACTTCGTTTTTGTTTTGCAGGACTG
TGACACGCCGTTGGCGAATCCAAGCTCAGGCTCACGAACACAAAAATGGC
GAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCACTGGA
TGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTGGGCCA
CACAAATCAAGGGAGTGTTTGCCCTTAATTCTTATCTTACGTAACCGCTT
GAAGTATGCTCTTACATACCGAGAAGTCATTGCAATTTTGATGCAACGAC
ATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAGACTTACCCTGCTGGG
TTCATGGATGTTGTGTCAATTCCAAAGACGAATGAGAACTTCCGTCTCCT
TTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAGGAGG
CTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAAGGGA
ATCCCTTACATCAACACTTATGATGGGAGGACTATTCGCTACCCAGACCC
ACTCATCAAGGCCAATGATACCATCAAGCTGGACCTGGAGACTAACAAGA
TCACCGAGTTCATCAAGTTTGATGTTGGAAATGTTGTGATGGTGACTGGA
GGGAGAAACAGAGACGTGTTGGAATCATTAAGAACAGAGAAAGCATAAGG
GTAGCTTTGAAACTATCCACTCCAGGATGCTCTTGGTCATGAGTTTGCAC
TCGTCTTGGAAATGTGTCACATTGGCAGGGTACAAAGCATGGTTTCTNCT
TCCAGGGCAAGGTANTAACTTNCATCATTGAGGAGCAGGNANANACAGCC
CTGGCGACTTAGCAGCCGCCA
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