EY649735

Overview
NameEY649735
Unique NameEY649735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.595e-31
Identity = 77/194 (39.69%), Postives = 110/194 (56.70%), Query Frame = 3
Query:  102 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--TIRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            +G K+HLKRL AP  W L +    F  +P  G H   E LPL+LI+R+ LKYA   RE   I+    VLVD +VR ++  P G MDVVS+P  NEN+R+L+D KGR +L     E    KLCK+++    + G   +N +DGR   I+  DP      + K  DT+ + +   +I   I F+VG +  +TGG++
Sbjct:    4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKH 195          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.009e-31
Identity = 74/185 (40.00%), Postives = 106/185 (57.30%), Query Frame = 3
Query:  105 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            G +KHLKR  APK W + K    +  K S+GPH   E +PL+++LR+ L  A   RE   IL    VLVD   R +  +P GFMDV+SIPK N+ FR+L D KGR  L  I ++++ FKL K+      + G   +N   GR I   D   K  D + L++   KI++ IKF+ G + ++TGG++
Sbjct:    5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEGALGLITGGKH 188          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.191e-30
Identity = 69/194 (35.57%), Postives = 106/194 (54.64%), Query Frame = 3
Query:  102 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            +G +KHLKRL APK+W + +    +  +PS+GPH     LPL+L+LR+ L YA   RE   ++    VLVD   R D  YP G MDV+S+P  NE+F ++ D KGR +L+ I+D     KLCK+ +    + G   +N +DGR          +  + + K  D + L +    I   ++F  G +  +TGG++
Sbjct:    4 KGPRKHLKRLPAPKNWQISRKTNKYTTRPSAGPHAMGSSLPLLLVLRDLLGYADNAREAKKVIKMGKVLVDGVKRKDHRYPTGLMDVISLPDANESFLVVLDEKGRIKLNKIKDNTK--KLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKLAYITGGKH 195          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.395e-29
Identity = 72/190 (37.89%), Postives = 111/190 (58.42%), Query Frame = 3
Query:  102 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            +G K+HLKRL AP  W + +    +A +PS GPH  +  +PLI I+R+ L YA T RE   IL +  +LVD +VR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEAK K  ++ + +  +     +N +DG     ++   D   K + T+ + +   +I + + F+VG  V VT G+N
Sbjct:    4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDGSNHLVSLAEKD-AYKTSYTVIMQVPERQIVKVLPFEVGAYVFVTQGKN 192          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.279e-28
Identity = 72/191 (37.70%), Postives = 110/191 (57.59%), Query Frame = 3
Query:  102 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD KVR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + +   +I E + F+ G  V VT G+N
Sbjct:    4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDG--TNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYVFVTQGKN 192          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.279e-28
Identity = 73/198 (36.87%), Postives = 110/198 (55.56%), Query Frame = 3
Query:   96 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            MAR G ++HLK L APK W + +  G F  KPS GPH     +PL++++R+ L YA T RE   ++ + H  +D +VR +  YP GFMDV+ I  T E +R+L      F LH I  EEA+FKL ++      + G   ++ +DGR   IR  DP         K   T+K+ +   ++  +   +VG++V++ GGRN
Sbjct:    1 MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRN 198          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.346e-28
Identity = 71/191 (37.17%), Postives = 110/191 (57.59%), Query Frame = 3
Query:  102 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD +VR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + +   +I E + F+ G  V VT G+N
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKN 192          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.288e-28
Identity = 74/197 (37.56%), Postives = 109/197 (55.33%), Query Frame = 3
Query:   96 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            MAR G KKHLK L APK W + +    +A KPS GPH    C PL++I+R+ L YA T RE   ++ + H  VD +VR +  YP G MDV+ I  T E +R++        L  I  EEAK+KL ++ +    + G   +N +DGR   I+  DP      + K   T+++ +   +I  +I  D G +V+++GGRN
Sbjct:    1 MARMGGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRN 197          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.082e-27
Identity = 68/194 (35.05%), Postives = 108/194 (55.67%), Query Frame = 3
Query:  102 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++A  KLCK+ +    + G   +N +DGR          +  + + K  D++ + +    I   + F  G +  VTGG++
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKADAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKH 195          
BLAST of EY649735 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.414e-27
Identity = 66/194 (34.02%), Postives = 107/194 (55.15%), Query Frame = 3
Query:  102 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN 659
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L    +   ++F+ G +  +TGG++
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKH 195          
The following BLAST results are available for this feature:
BLAST of EY649735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_METJA3.595e-3139.6930S ribosomal protein S4e OS=Methanocaldococcus ja... [more]
RS4E_METST8.009e-3140.0030S ribosomal protein S4e OS=Methanosphaera stadtm... [more]
RS4E_META35.191e-3035.5730S ribosomal protein S4e OS=Methanococcus aeolicu... [more]
RS4E_PYRKO4.395e-2937.8930S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]
RS4E_PYRHO1.279e-2837.7030S ribosomal protein S4e OS=Pyrococcus horikoshii... [more]
RS4E_HYPBU1.279e-2836.8730S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_PYRAB6.346e-2837.1730S ribosomal protein S4e OS=Pyrococcus abyssi GN=... [more]
RS4E_STAMF8.288e-2837.5630S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_METM51.082e-2735.0530S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METVS1.414e-2734.0230S ribosomal protein S4e OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649735 ID=EY649735; Name=EY649735; organism=Citrus sinensis; type=EST; length=871bp
CTAGCATCGCTTGTGAGTGCATTTCACTTCGTTTTTGTTTTGCAGGACTG
TGACACGCCGTTGGCGAATCCAAGCTCAGGCTCACGAACACAAAAATGGC
GAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCACTGGA
TGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTGGGCCA
CACAAATCAAGGGAGTGTTTGCCCTTAATTCTTATCTTACGTAACCGCTT
GAAGTATGCTCTTACATACCGAGAAGTCATTGCAATTTTGATGCAACGAC
ATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAGACTTACCCTGCTGGG
TTCATGGATGTTGTGTCAATTCCAAAGACGAATGAGAACTTCCGTCTCCT
TTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAGGAGG
CTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAAGGGA
ATCCCTTACATCAACACTTATGATGGGAGGACTATTCGCTACCCAGACCC
ACTCATCAAGGCCAATGATACCATCAAGCTGGACCTGGAGACTAACAAGA
TCACCGAGTTCATCAAGTTTGATGTTGGAAATGTTGTGATGGTGACTGGA
GGGAGAAACAGAGACGTGTTGGAATCATTAAGAACAGAGAAAGCATAAGG
GTAGCTTTGAAACTATCCACTCCAGGATGCTCTTGGTCATGAGTTTGCAC
TCGTCTTGGAAATGTGTCACATTGGCAGGGTACAAAGCATGGTTTCTNCT
TCCAGGGCAAGGTANTAACTTNCATCATTGAGGAGCAGGNANANACAGCC
CTGGCGACTTAGCAGCCGCCA
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