EY702828

Overview
NameEY702828
Unique NameEY702828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 72/129 (55.81%), Postives = 90/129 (69.77%), Query Frame = 3
Query:   12 GGKGLLAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINK 395
            GG G   AKTT           + +SRSS+AG+QFPVGRI R+LK+   A  RVGA A VYL+++LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+I + L+ K
Sbjct:    6 GGGGRGKAKTT-----------KAVSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPK 122          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A5_WHEAT (Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 68/113 (60.18%), Postives = 85/113 (75.22%), Query Frame = 3
Query:   60 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            K  D+K+ ++RS +AG+QFPVGRI R+LK    A  RVG+ A VYLA++LEYL AEVLELAGNA+KD K  RI PRHL LA+R D+EL  L+ G TIA GGVIP+I+  L+ K
Sbjct:    5 KGGDRKKAVTRSVKAGLQFPVGRIGRYLKKGRYAQ-RVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPK 116          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A4_RAT (Histone H2A type 4 OS=Rattus norvegicus PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 70/127 (55.12%), Postives = 90/127 (70.87%), Query Frame = 3
Query:   27 LAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 404
            ++ +   G K + K K    SRS RAG+QFPVGR+HR L+    A  R+GA   VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K T+
Sbjct:    1 MSGRAKQGGKARAKAK----SRSFRAGLQFPVGRVHRLLRQGNYAE-RIGAGTPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A3_LYTPI (Histone H2A, sperm (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 68/106 (64.15%), Postives = 80/106 (75.47%), Query Frame = 3
Query:   87 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 401
            SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++ EYL AE+LELAGNA+ D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T
Sbjct:    3 SRSSRAGLQFPVGRVHRFLRKGNYAQ-RVGAGAPVYLAAVFEYLAAEILELAGNAAPDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 107          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 67/108 (62.04%), Postives = 83/108 (76.85%), Query Frame = 3
Query:   75 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            K   SRS++AG+ FPVGRIHR L+    A  RVG+ A VYL S+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K
Sbjct:   12 KASTSRSAKAGLTFPVGRIHRLLRKGNYAQ-RVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPK 118          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A1_WHEAT (Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 68/113 (60.18%), Postives = 85/113 (75.22%), Query Frame = 3
Query:   60 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            K  D+K+ ++RS +AG+QFPVGRI R+LK    A  RVG+ A VYLA++LEYL AEVLELAGNA+KD K  RI PRHL LA+R D+EL  L+ G TIA GGVIP+I+  L+ K
Sbjct:    5 KGGDRKKAVTRSVKAGLQFPVGRIGRYLKKGRYAQ-RVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPK 116          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.103e-27
Identity = 68/108 (62.96%), Postives = 82/108 (75.93%), Query Frame = 3
Query:   75 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            K+  SRSS+AG+QFPVGRI R LK+   A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K
Sbjct:   14 KKSTSRSSKAGLQFPVGRIARFLKNGKYAT-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPK 120          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.358e-27
Identity = 73/136 (53.68%), Postives = 91/136 (66.91%), Query Frame = 3
Query:    3 TRPGGKGLLAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTKD 407
            T  GGKG    K  A  +     +K+ +SRS +AG+QFPVGRI R+LK    A   VG  A VYLA++LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K T +
Sbjct:    6 TGAGGKG----KKGAAGRKVGGPRKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQX-VGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAE 136          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.358e-27
Identity = 72/132 (54.55%), Postives = 90/132 (68.18%), Query Frame = 3
Query:   15 GKGLLAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTKD 407
            G G    K  AG K     +K+ +SRS +AG+QFPVGRI R+LK    A  R+G  A VYLA++LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K T +
Sbjct:    7 GAGGKLKKGAAGRK-AGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQ-RIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 136          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.358e-27
Identity = 72/132 (54.55%), Postives = 90/132 (68.18%), Query Frame = 3
Query:   15 GKGLLAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTKD 407
            G G    K  AG K     +K+ +SRS +AG+QFPVGRI R+LK    A  R+G  A VYLA++LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K T +
Sbjct:    7 GAGGKLKKGAAGRK-AGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQ-RIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 136          
The following BLAST results are available for this feature:
BLAST of EY702828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
H2AXA_ORYSI3.141e-2755.81Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A5_WHEAT3.141e-2760.18Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 S... [more]
H2A4_RAT3.141e-2755.12Histone H2A type 4 OS=Rattus norvegicus PE=2 SV=2[more]
H2A3_LYTPI3.141e-2764.15Histone H2A, sperm (Fragment) OS=Lytechinus pictus... [more]
H2A2_PICGU3.141e-2762.04Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=... [more]
H2A1_WHEAT3.141e-2760.18Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 S... [more]
H2A2_ARATH4.103e-2762.96Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2A_MAIZE5.358e-2753.68Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A5_ORYSJ5.358e-2754.55Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI5.358e-2754.55Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-G04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702828 ID=EY702828; Name=EY702828; organism=Citrus sinensis; type=EST; length=738bp
CCACGCGTCCGGGAGGGAAGGGTCTTTTAGCGGCGAAAACCACGGCTGGT
AACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTCG
TGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCAA
GGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGCT
TCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATGC
AAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTTG
CTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGCT
GGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTAC
CAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACTT
TGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTTT
GTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTTG
ACTCTTAGGTTTGTCCTCTGGATCTATATACTCATGTTTGGAGTAGGAAT
GTTGTTCGTTATGCACTATTATCTGTCTGTATCTGTTTCTTTCTGGCACT
GGTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCCTGACATGATATGAAA
GCAGCCATCATCTGTGTTTCTTTAAAAAAAAAAAAAAA
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