EY702828

Overview
NameEY702828
Unique NameEY702828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1901 contig Csv1_Contig1901:398..1136. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AV_HUMAN (Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = 3
Query:   54 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 395
            KD  K K + +SRS RAG+QFPVGRIHRHLK+R  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AV_DANRE (Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = 3
Query:   54 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 395
            KD  K K + +SRS RAG+QFPVGRIHRHLK+R  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AV_CHICK (Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = 3
Query:   54 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 395
            KD  K K + +SRS RAG+QFPVGRIHRHLK+R  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AV_BOVIN (Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = 3
Query:   54 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 395
            KD  K K + +SRS RAG+QFPVGRIHRHLK+R  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AV_RABIT (Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 9.392e-48
Identity = 95/114 (83.33%), Postives = 102/114 (89.47%), Query Frame = 3
Query:   54 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 395
            KD  K K + +SRS RAG+QFPVGRIHRHLK+R  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGG IPHIHKSLI K
Sbjct:    8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGAIPHIHKSLIGK 121          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 5.154e-46
Identity = 96/128 (75.00%), Postives = 104/128 (81.25%), Query Frame = 3
Query:   12 GGKGLLAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 395
            GGKG          KD  K K + +SRS+RAG+QFPVGRIHR LK R  + GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHL LAIRGDEELDTLIK TIAGGGVIPHIH+ L+NK
Sbjct:    3 GGKG-------KAGKDSGKSKSKVVSRSARAGLQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLHLAIRGDEELDTLIKATIAGGGVIPHIHRYLMNK 123          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 8.791e-46
Identity = 94/114 (82.46%), Postives = 100/114 (87.72%), Query Frame = 3
Query:   54 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 395
            KD  K K   I+RSSRAG+QFPVGRIHR LK+R  +HGRVG TAAVY A+ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDTGKAKATSITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGK 121          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 8.791e-46
Identity = 94/114 (82.46%), Postives = 100/114 (87.72%), Query Frame = 3
Query:   54 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 395
            KD  K K   I+RSSRAG+QFPVGRIHR LK+R  +HGRVG TAAVY A+ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDTGKAKATSITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGK 121          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AV_TETTH (Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.165e-44
Identity = 95/129 (73.64%), Postives = 104/129 (80.62%), Query Frame = 3
Query:   12 GGKGLLAAKTTAGNK-DKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 395
            GGKG    K   G K    K+KK P SRS +AG+QFPVGRIHR LK R++A  RVGATAAVY A+ILEYLTAEVLELAGNASKD KV+RITPRHL LAIRGDEELD LIK TIAGGGVIPHIHK+L+ K
Sbjct:    3 GGKGGKGGKGGKGGKVGGAKNKKTPQSRSYKAGLQFPVGRIHRFLKGRVSAKNRVGATAAVYAAAILEYLTAEVLELAGNASKDFKVRRITPRHLLLAIRGDEELDILIKATIAGGGVIPHIHKALLGK 131          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.897e-42
Identity = 85/131 (64.89%), Postives = 105/131 (80.15%), Query Frame = 3
Query:   12 GGKGLLAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTK 404
            GGKG        G  +   + K+  ++S+RAG+QFPVGRIHRHLKSR   H R+GA AAVY ++ILEYLTAEVLELAGNASKD+++KRITPRHLQLAIRGDEELD++++ TIAGGGV+PHIHK+LI   +K
Sbjct:    8 GGKG--------GAANAKNEPKKQTTQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVRATIAGGGVLPHIHKTLIKAPSK 130          
The following BLAST results are available for this feature:
BLAST of EY702828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
H2AV_HUMAN3.228e-4884.21Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3[more]
H2AV_DANRE3.228e-4884.21Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3[more]
H2AV_CHICK3.228e-4884.21Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2[more]
H2AV_BOVIN3.228e-4884.21Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3[more]
H2AV_RABIT9.392e-4883.33Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE... [more]
H2AV_CAEEL5.154e-4675.00Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 P... [more]
H2AZL_XENTR8.791e-4682.46Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl... [more]
H2AZL_XENLA8.791e-4682.46Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AV_TETTH2.165e-4473.64Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 P... [more]
H2AZ_USTMA5.897e-4264.89Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-G04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702828 ID=EY702828; Name=EY702828; organism=Citrus sinensis; type=EST; length=738bp
CCACGCGTCCGGGAGGGAAGGGTCTTTTAGCGGCGAAAACCACGGCTGGT
AACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTCG
TGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCAA
GGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGCT
TCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATGC
AAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTTG
CTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGCT
GGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTAC
CAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACTT
TGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTTT
GTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTTG
ACTCTTAGGTTTGTCCTCTGGATCTATATACTCATGTTTGGAGTAGGAAT
GTTGTTCGTTATGCACTATTATCTGTCTGTATCTGTTTCTTTCTGGCACT
GGTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCCTGACATGATATGAAA
GCAGCCATCATCTGTGTTTCTTTAAAAAAAAAAAAAAA
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