EY702828

Overview
NameEY702828
Unique NameEY702828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A2_YEAST (Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.724e-25
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 3 
Query:   12 GGKGLLAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            GGKG  A      ++          SRS++AG+ FPVGR+HR L+    A  R+G+ A VYL ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA GGV+P+IH++L+ K
Sbjct:    3 GGKGGKAGSAAKASQ----------SRSAKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPK 120
[Close]
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A1_YEAST (Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.724e-25
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 3 
Query:   12 GGKGLLAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            GGKG  A      ++          SRS++AG+ FPVGR+HR L+    A  R+G+ A VYL ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA GGV+P+IH++L+ K
Sbjct:    3 GGKGGKAGSAAKASQ----------SRSAKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPK 120
[Close]
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A2_SCHPO (Histone H2A-beta OS=Schizosaccharomyces pombe GN=hta2 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.251e-25
Identity = 64/104 (61.54%), Postives = 80/104 (76.92%), Query Frame = 3 
Query:   87 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINK 395
            SRS++AG+ FPVGR+HR L+    A  RVGA A VYLA++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K
Sbjct:   18 SRSAKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPK 120
[Close]
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AW_MOUSE (Core histone macro-H2A.2 OS=Mus musculus GN=H2afy2 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.940e-25
Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = 3 
Query:   66 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            K K   +SRS+RAG+ FPVGR+ R+LK     + R+   A VY+A+++EYL AE+LELAGNA++D K  RI PRH+ LA+  DEEL+ L+KG TIA GGV+P IH  L+ K
Sbjct:    7 KKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKY-RISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAK 116
[Close]
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AW_HUMAN (Core histone macro-H2A.2 OS=Homo sapiens GN=H2AFY2 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.940e-25
Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = 3 
Query:   66 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            K K   +SRS+RAG+ FPVGR+ R+LK     + R+   A VY+A+++EYL AE+LELAGNA++D K  RI PRH+ LA+  DEEL+ L+KG TIA GGV+P IH  L+ K
Sbjct:    7 KKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKY-RISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAK 116
[Close]
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A2_ASHGO (Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.940e-25
Identity = 61/104 (58.65%), Postives = 80/104 (76.92%), Query Frame = 3 
Query:   87 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            SRS++AG+ FPVGR+HR L+    A  R+G+ A VYL ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA GGV+P+IH +L+ K
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPK 119
[Close]
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A1_CANGA (Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.940e-25
Identity = 65/129 (50.39%), Postives = 88/129 (68.22%), Query Frame = 3 
Query:   12 GGKGLLAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            GGKG  A      ++          +RS++AG+ FPVGR+HR L+    A  R+G+ A VYL ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA GGV+P+IH++L+ K
Sbjct:    3 GGKGGKAGSAAKASQ----------TRSAKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPK 120
[Close]
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A2_CANGA (Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.840e-25
Identity = 60/104 (57.69%), Postives = 81/104 (77.88%), Query Frame = 3 
Query:   87 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            +RS++AG+ FPVGR+HR L+    A  R+G+ A VYL ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA GGV+P+IH++L+ K
Sbjct:   18 TRSAKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPK 120
[Close]
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A1_ASHGO (Histone H2A.1 OS=Ashbya gossypii GN=HTA1 PE=3 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 5.015e-25
Identity = 60/104 (57.69%), Postives = 80/104 (76.92%), Query Frame = 3 
Query:   87 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            SRS++AG+ FPVGR+HR L+    A  R+G+ A VY+ ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA GGV+P+IH +L+ K
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQ-RIGSGAPVYMTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPK 119
[Close]
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A_YARLI (Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 64/129 (49.61%), Postives = 88/129 (68.22%), Query Frame = 3 
Query:    6 RPGGKGLLAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLI 389
            + GGK   ++KT+              SRS++A + FPVGR+HR L+    A  R+GA A +YLA++LEYL  E+LEL+GNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+
Sbjct:    6 KSGGKAASSSKTSK-------------SRSAKADLTFPVGRVHRLLRKGNYAQ-RIGAGAPIYLAAVLEYLAVEILELSGNAARDNKKSRIVPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLL 120
The following BLAST results are available for this feature:
BLAST of EY702828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
H2A2_YEAST1.724e-2551.16Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 ... [more]
H2A1_YEAST1.724e-2551.16Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 ... [more]
H2A2_SCHPO2.251e-2561.54Histone H2A-beta OS=Schizosaccharomyces pombe GN=h... [more]
H2AW_MOUSE2.940e-2554.05Core histone macro-H2A.2 OS=Mus musculus GN=H2afy2... [more]
H2AW_HUMAN2.940e-2554.05Core histone macro-H2A.2 OS=Homo sapiens GN=H2AFY2... [more]
H2A2_ASHGO2.940e-2558.65Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3[more]
H2A1_CANGA2.940e-2550.39Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=... [more]
H2A2_CANGA3.840e-2557.69Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=... [more]
H2A1_ASHGO5.015e-2557.69Histone H2A.1 OS=Ashbya gossypii GN=HTA1 PE=3 SV=3[more]
H2A_YARLI6.550e-2549.61Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-G04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702828 ID=EY702828; Name=EY702828; organism=Citrus sinensis; type=EST; length=738bp
CCACGCGTCCGGGAGGGAAGGGTCTTTTAGCGGCGAAAACCACGGCTGGT
AACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTCG
TGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCAA
GGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGCT
TCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATGC
AAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTTG
CTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGCT
GGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTAC
CAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACTT
TGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTTT
GTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTTG
ACTCTTAGGTTTGTCCTCTGGATCTATATACTCATGTTTGGAGTAGGAAT
GTTGTTCGTTATGCACTATTATCTGTCTGTATCTGTTTCTTTCTGGCACT
GGTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCCTGACATGATATGAAA
GCAGCCATCATCTGTGTTTCTTTAAAAAAAAAAAAAAA
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