EY702828

Overview
NameEY702828
Unique NameEY702828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A_EUGGR (Histone H2A OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 71/132 (53.79%), Postives = 88/132 (66.67%), Query Frame = 3
Query:   12 GGKGLLAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 404
            GGK    AK  AG K   K K     +S +AG+ FPVGR    L++   A  RVG  A VYLA++LEYL+AE+LELAGNAS+D K KRITPR L LA+R DEEL+ L+ G TIA GGV+P+I + L+ K  K
Sbjct:   11 GGKDKKGAK--AGVK---KGKTGGSGQSKKAGLTFPVGRTGSLLRAGRYAK-RVGKGAPVYLAAVLEYLSAELLELAGNASRDNKKKRITPRFLTLAVRNDEELNKLLSGVTIASGGVLPNIQQVLLKKKGK 136          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A3_STRPU (Histone H2A-beta, sperm (Fragment) OS=Strongylocentrotus purpuratus PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.007e-23
Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = 3
Query:   66 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTL 332
            K K +   RSSRAG+QFPVGR+HR L+    A+ RVGA A VYLA++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L
Sbjct:    1 KAKGKAKRRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 88          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AZ_DICDI (Histone H2A.z OS=Dictyostelium discoideum GN=H2AZ PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 3
Query:   60 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLEL----AGNASKDL-KVKRITPRHLQLAIRGDEELDTLIK--GTIAGGGVIPHIHKSL 386
            K   + +P+ +S++AG+ FPVGRIHR LK+++    RV   ++VYLA+ILEYL +EVLEL        SK+   V+RI+PRHL LAI+ DEELD LI+   TIAGGGVIP+IH+ L
Sbjct:   10 KVNKRVKPVPKSTKAGLIFPVGRIHRMLKNKVPLK-RVSILSSVYLAAILEYLASEVLELTISQVSIQSKEYHNVRRISPRHLLLAIKTDEELDNLIRVSTTIAGGGVIPYIHEVL 124          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A_TRYCR (Histone H2A OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 54/115 (46.96%), Postives = 79/115 (68.70%), Query Frame = 3
Query:   60 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKD--LKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            K   KKR   RS++AG+ FPVGR+   L+    A  R+GA+ AVY+A++LEYLTAE+LEL+  A+     K KR+TPR + LA+R D++L  L+K  T++ GGV+P ++K+L  K
Sbjct:    9 KKASKKRSGGRSAKAGLIFPVGRVGSLLRRGQYAR-RIGASGAVYMAAVLEYLTAELLELSVKAASQQAKKPKRLTPRTVTLAVRHDDDLGMLLKDVTLSRGGVMPSLNKALAKK 122          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A2_XENLA (Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.481e-18
Identity = 57/127 (44.88%), Postives = 80/127 (62.99%), Query Frame = 3
Query:   27 LAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 404
            ++ +   G K + K K    +RSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELA     ++  + +       ++  DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    1 MSGRGKQGGKTRAKSK----TRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAWERLPEITKRPVLSPGTCNSLCNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTE 122          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = 3
Query:   72 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 404
            K +P SRS+RAGI FPV R+ R L+    A  RV +TA VYLA++LEYL  E+LELA N     K  RITP+H+  A+  D EL++L +  TIA GGV+P   +S   K  K
Sbjct:   31 KSKPESRSARAGITFPVSRVDRLLREGRFAP-RVESTAPVYLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLPTPQQSTGEKKKK 141          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AY_TETTH (Histone H2A.Y OS=Tetrahymena thermophila GN=HTAY PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.558e-16
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3
Query:   87 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTI--AGGGVIPHIHKSLINKTTK 404
            S S ++G+ FP GR+ R+LK +     RV ++  +YLA +LEYL AEVLE AGN +K+ ++ RI P H++ A R D EL+  + GTI   GG    +    +INK+ K
Sbjct:  282 STSQKSGLVFPCGRLRRYLK-QACKQFRVSSSCNIYLAGVLEYLAAEVLETAGNIAKNNRLSRINPVHIREAFRNDAELNQFVNGTIIAEGGSTSTNFVLPIINKSKK 388          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.602e-15
Identity = 50/117 (42.74%), Postives = 70/117 (59.83%), Query Frame = 3
Query:   39 TTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSL 386
            ++A NK     +++   RS +A +QF V R+   LK       R+GATA VYLA++LE L AEVLE+A N ++  K   I PRH+ LA+R D E++ L  G TI+  GV+P   K L
Sbjct:    3 SSANNKGAGTSRRK--LRSEKAALQFSVSRVEYSLKKGRYCR-RLGATAPVYLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKEL 116          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.025e-15
Identity = 51/131 (38.93%), Postives = 75/131 (57.25%), Query Frame = 3
Query:   39 TTAGNKDKDKDKKRPI--------SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 404
            TT  N +K  +K++ +        SRS+RA + FPV RI + ++       R  + A V+LA++LEYLT E+LEL+   +      RITP+H+ L+I  D EL+ L+K  TIA GGV   IH  L++   K
Sbjct:  108 TTKKNNEKSNEKQKSVKFANKINESRSARADLTFPVSRIEKMIREGRFTK-RCSSDAPVFLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKK 237          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A1_LEIIN (Histone H2A.1 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.025e-15
Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 3
Query:   87 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVK--RITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            S+S++ G+ FPVGR+   ++    A  R+GA+ AVYLA++LEYLTAE+LEL+  A+     K  R+ PR + LA R D+++ TL+K  T++  GV+P+I K++  K
Sbjct:   16 SKSAKCGLIFPVGRVGGMMRRGQYAR-RIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPNISKAMAKK 120          
The following BLAST results are available for this feature:
BLAST of EY702828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
H2A_EUGGR7.242e-2453.79Histone H2A OS=Euglena gracilis PE=2 SV=1[more]
H2A3_STRPU8.007e-2365.17Histone H2A-beta, sperm (Fragment) OS=Strongylocen... [more]
H2AZ_DICDI3.043e-2253.45Histone H2A.z OS=Dictyostelium discoideum GN=H2AZ ... [more]
H2A_TRYCR2.041e-1846.96Histone H2A OS=Trypanosoma cruzi PE=3 SV=2[more]
H2A2_XENLA3.481e-1844.88Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3[more]
H2AX_DICDI3.849e-1749.11Histone H2A.x OS=Dictyostelium discoideum GN=H2AX ... [more]
H2AY_TETTH5.558e-1642.59Histone H2A.Y OS=Tetrahymena thermophila GN=HTAY P... [more]
H2A2_LILLO3.602e-1542.74Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 S... [more]
H2AV1_DICDI8.025e-1538.93Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av... [more]
H2A1_LEIIN8.025e-1543.40Histone H2A.1 OS=Leishmania infantum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-G04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702828 ID=EY702828; Name=EY702828; organism=Citrus sinensis; type=EST; length=738bp
CCACGCGTCCGGGAGGGAAGGGTCTTTTAGCGGCGAAAACCACGGCTGGT
AACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTCG
TGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCAA
GGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGCT
TCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATGC
AAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTTG
CTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGCT
GGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTAC
CAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACTT
TGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTTT
GTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTTG
ACTCTTAGGTTTGTCCTCTGGATCTATATACTCATGTTTGGAGTAGGAAT
GTTGTTCGTTATGCACTATTATCTGTCTGTATCTGTTTCTTTCTGGCACT
GGTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCCTGACATGATATGAAA
GCAGCCATCATCTGTGTTTCTTTAAAAAAAAAAAAAAA
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