EY702828

Overview
NameEY702828
Unique NameEY702828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1901 contig Csv1_Contig1901:398..1136. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.788e-14
Identity = 46/113 (40.71%), Postives = 74/113 (65.49%), Query Frame = 3
Query:   66 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVK--RITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            K  ++  S+S++ G+ FPVGR+   ++    A  R+GA+ AVYLA++LEYLTAE+LEL+  A+     K  R+ PR + LA R D+++ TL+K  T++  GV+P + K++  K
Sbjct:    9 KAARKSGSKSAKCGLIFPVGRVGGMMRRGQYAR-RIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKK 120          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AV2_DICDI (Histone H2A.v2 OS=Dictyostelium discoideum GN=H2Av2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 53/132 (40.15%), Postives = 74/132 (56.06%), Query Frame = 3
Query:   18 KGLLAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGN-ASKDLKVKRITPRHLQLAIRGDEELDTLIKGT-IAGGGVIPHIHKSLINKTTKD 407
            K  +  KT +    K K   R  SRS+RAG+   V R+ + L+ R  +  RV  T+ V+LA++LEY+  E+LEL+ N  S   K +RI  RH+ L+I  D EL  L+    I  GGV+  IH SL+ K  KD
Sbjct:  157 KSPIVKKTNSPKGSKFKKTIRS-SRSTRAGLTISVSRVEKLLRGRRYSK-RVSPTSCVFLAAVLEYMVLELLELSLNELSLSKKSRRIKNRHINLSILKDVELSALLNDVIICSGGVLSSIHPSLL-KLKKD 285          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A_OLILU (Histone H2A (Fragment) OS=Olisthodiscus luteus PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 3
Query:  177 ATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHI 374
            A A VYLA+   YLTAE+L LAGNA++D K  RI PRH+QLA+     L+ L+   TIA GGV+P+I
Sbjct:    1 AGAPVYLAAXXXYLTAEILXLAGNAARDNKKSRIIPRHVQLAVXXXXXLNKLLGNVTIAQGGVLPNI 67          
The following BLAST results are available for this feature:
BLAST of EY702828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
H2A2_LEIIN1.788e-1440.71Histone H2A.2 OS=Leishmania infantum PE=2 SV=1[more]
H2AV2_DICDI2.185e-1240.15Histone H2A.v2 OS=Dictyostelium discoideum GN=H2Av... [more]
H2A_OLILU9.182e-1155.22Histone H2A (Fragment) OS=Olisthodiscus luteus PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-G04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702828 ID=EY702828; Name=EY702828; organism=Citrus sinensis; type=EST; length=738bp
CCACGCGTCCGGGAGGGAAGGGTCTTTTAGCGGCGAAAACCACGGCTGGT
AACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTCG
TGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCAA
GGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGCT
TCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATGC
AAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTTG
CTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGCT
GGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTAC
CAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACTT
TGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTTT
GTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTTG
ACTCTTAGGTTTGTCCTCTGGATCTATATACTCATGTTTGGAGTAGGAAT
GTTGTTCGTTATGCACTATTATCTGTCTGTATCTGTTTCTTTCTGGCACT
GGTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCCTGACATGATATGAAA
GCAGCCATCATCTGTGTTTCTTTAAAAAAAAAAAAAAA
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