EY702828

Overview
NameEY702828
Unique NameEY702828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1901 contig Csv1_Contig1901:398..1136. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A_MYTGA (Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.356e-29
Identity = 74/121 (61.16%), Postives = 88/121 (72.73%), Query Frame = 3
Query:   45 AGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 404
            +G     K K +  SRSSRAG+QFPVGRIHR L+    A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    2 SGRGKGGKAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.356e-29
Identity = 74/121 (61.16%), Postives = 88/121 (72.73%), Query Frame = 3
Query:   45 AGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 404
            +G     K K +  SRSSRAG+QFPVGRIHR L+    A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    2 SGRGKGGKAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.356e-29
Identity = 74/121 (61.16%), Postives = 88/121 (72.73%), Query Frame = 3
Query:   45 AGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 404
            +G     K K +  SRSSRAG+QFPVGRIHR L+    A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    2 SGRGKGGKAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.356e-29
Identity = 74/121 (61.16%), Postives = 88/121 (72.73%), Query Frame = 3
Query:   45 AGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 404
            +G     K K +  SRSSRAG+QFPVGRIHR L+    A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    2 SGRGKGGKAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.356e-29
Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 3
Query:   39 TTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            TT G + K K  K  +SRSS+AG+QFPVGRI R LK+   A  RVGA A VYL+++LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct:    6 TTKGGRGKPKASKS-VSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 123          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.356e-29
Identity = 70/111 (63.06%), Postives = 86/111 (77.48%), Query Frame = 3
Query:   75 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 404
            K+ +SRSS+AG+QFPVGRI R+LK    A  R+GA A VYLA++LEYLTAEVLELAGNA++D K  RI PRH+QLAIR DEEL  L+   TIA GGV+P+IH  L+ K +K
Sbjct:   12 KKAVSRSSKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSK 121          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.356e-29
Identity = 70/111 (63.06%), Postives = 86/111 (77.48%), Query Frame = 3
Query:   66 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            K K +  SRSSRAG+QFPVGR+HR L+    A+ RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K
Sbjct:    9 KSKSKAKSRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 118          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.356e-29
Identity = 71/129 (55.04%), Postives = 92/129 (71.32%), Query Frame = 3
Query:   21 GLLAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 404
            G    K  AG +     KK+P+SRS ++G+QFPVGRI R+LK    +  RVG  A VYLA++LEYL AEVLELAGNA++D K  RI PRH+ LA+R DEEL TL+KG TIA GGV+P+I+  L+ K ++
Sbjct:    4 GTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSK-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSE 131          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.383e-29
Identity = 75/120 (62.50%), Postives = 88/120 (73.33%), Query Frame = 3
Query:   48 GNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 404
            G K K K K    SRSSRAG+QFPVGRIHR L+    A  RVGA A VYLA+++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    7 GGKVKGKSK----SRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121          
BLAST of EY702828 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.383e-29
Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 3
Query:   15 GKGLLAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 395
            G+G   +KT A  K          +RSSRAG+QFPVGR+HR L+    AH RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K
Sbjct:    3 GRGKAVSKTRAKAK----------TRSSRAGLQFPVGRVHRLLRKGNYAH-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 119          
The following BLAST results are available for this feature:
BLAST of EY702828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
H2A_MYTGA3.356e-2961.16Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3[more]
H2A_MYTED3.356e-2961.16Histone H2A OS=Mytilus edulis PE=3 SV=3[more]
H2A_MYTCH3.356e-2961.16Histone H2A OS=Mytilus chilensis PE=3 SV=3[more]
H2A_MYTCA3.356e-2961.16Histone H2A OS=Mytilus californianus PE=3 SV=3[more]
H2AX_CICAR3.356e-2960.00Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2A4_VOLCA3.356e-2963.06Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A4_PSAMI3.356e-2963.06Late histone H2A.2.2 OS=Psammechinus miliaris PE=3... [more]
H2A4_ARATH3.356e-2955.04Probable histone H2A.4 OS=Arabidopsis thaliana GN=... [more]
H2A_LITVA4.383e-2962.50Histone H2A OS=Litopenaeus vannamei PE=1 SV=3[more]
H2AX_XENLA4.383e-2957.81Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-G04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702828 ID=EY702828; Name=EY702828; organism=Citrus sinensis; type=EST; length=738bp
CCACGCGTCCGGGAGGGAAGGGTCTTTTAGCGGCGAAAACCACGGCTGGT
AACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTCG
TGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCAA
GGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGCT
TCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATGC
AAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTTG
CTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGCT
GGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTAC
CAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACTT
TGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTTT
GTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTTG
ACTCTTAGGTTTGTCCTCTGGATCTATATACTCATGTTTGGAGTAGGAAT
GTTGTTCGTTATGCACTATTATCTGTCTGTATCTGTTTCTTTCTGGCACT
GGTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCCTGACATGATATGAAA
GCAGCCATCATCTGTGTTTCTTTAAAAAAAAAAAAAAA
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