EY649716

Overview
NameEY649716
Unique NameEY649716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGB1_RAT (High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.833e-13
Identity = 40/104 (38.46%), Postives = 53/104 (50.96%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +                     +EDD+E+
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEED 193          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGB1_MOUSE (High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.833e-13
Identity = 40/104 (38.46%), Postives = 53/104 (50.96%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +                     +EDD+E+
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEED 193          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGB1_CRIGR (High mobility group protein B1 (Fragment) OS=Cricetulus griseus GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.833e-13
Identity = 40/104 (38.46%), Postives = 53/104 (50.96%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +                     +EDD+E+
Sbjct:   56 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEED 158          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGB2_PIG (High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 5.007e-13
Identity = 42/104 (40.38%), Postives = 53/104 (50.96%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP SAFF+F  E R + K +HP   S+    K  GE W   S  DK PY  KA K K +YEKD+  Y R + +G                N+ +D+EE
Sbjct:   91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY-RAKGKGEAGKKGPGRPTGSKKKNEPEDEEE 192          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGB1_CHICK (High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.539e-13
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-NRRQAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP S FF+F  EFR + K  +P   S+  V K  GE W ++S+ +K PY  KA K K +YEKD+ +Y ++ + +G K             V +ED++EE
Sbjct:   88 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFDGAK---GAATKAARKKVEEEDEEEE 188          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGB2_HUMAN (High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.540e-13
Identity = 42/106 (39.62%), Postives = 52/106 (49.06%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR--RQAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP SAFF+F  E R + K +HP   S+    K  GE W   S  DK PY  KA K K +YEKD+  Y    +   G K               DE+++EE
Sbjct:   91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEE 195          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGB2_BOVIN (High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 8.540e-13
Identity = 42/106 (39.62%), Postives = 52/106 (49.06%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR--RQAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP SAFF+F  E R + K +HP   S+    K  GE W   S  DK PY  KA K K +YEKD+  Y    +   G K               DE+++EE
Sbjct:   91 DPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEE 195          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGB1_PAPAN (High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.540e-13
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR-QAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  + + +  K               +ED+++E
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDE 194          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGB1_MACFA (High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 8.540e-13
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR-QAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  + + +  K               +ED+++E
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDE 194          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGB1_HUMAN (High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 8.540e-13
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR-QAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  + + +  K               +ED+++E
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDE 194          
The following BLAST results are available for this feature:
BLAST of EY649716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HMGB1_RAT3.833e-1338.46High mobility group protein B1 OS=Rattus norvegicu... [more]
HMGB1_MOUSE3.833e-1338.46High mobility group protein B1 OS=Mus musculus GN=... [more]
HMGB1_CRIGR3.833e-1338.46High mobility group protein B1 (Fragment) OS=Crice... [more]
HMGB2_PIG5.007e-1340.38High mobility group protein B2 OS=Sus scrofa GN=HM... [more]
HMGB1_CHICK6.539e-1340.00High mobility group protein B1 OS=Gallus gallus GN... [more]
HMGB2_HUMAN8.540e-1339.62High mobility group protein B2 OS=Homo sapiens GN=... [more]
HMGB2_BOVIN8.540e-1339.62High mobility group protein B2 OS=Bos taurus GN=HM... [more]
HMGB1_PAPAN8.540e-1338.10High mobility group protein B1 OS=Papio anubis GN=... [more]
HMGB1_MACFA8.540e-1338.10High mobility group protein B1 OS=Macaca fascicula... [more]
HMGB1_HUMAN8.540e-1338.10High mobility group protein B1 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-G01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649716 ID=EY649716; Name=EY649716; organism=Citrus sinensis; type=EST; length=945bp
CCACGCGTCCGCCGCTATTCACATCTGCGTCTCTCTCTTTTTCTCTTTCC
TCTTTTTCTCTCATTTGAAGCCCTAACCCTAGCTCTATCTTTCTTCAGAA
ACAGGATTTGAAATGAAAGGAGGTAAATCAAAGTCAGACACCAGAAACGC
CAAGCTCTCTGTGAACAAGAAGCCTGCCAAAGCTGGACGAAAATCGGGAA
AGGCAGCTAAGGACCCGAACAAGCCAAAGAGGCCAGCCAGCGCCTTCTTT
GTTTTCATGGAAGAATTCCGTGAACAATACAAGAAGGATCATCCTAAGAA
CAAATCAGTTGCTGCTGTTGGTAAAGCTGGTGGTGAGAAATGGAAGTCAA
TGTCTGAAGCTGATAAAGCACCGTATGTTGCTAAGGCAGAGAAGCGCAAG
GTTGAGTATGAGAAGGATATGAAAAACTACAATAGGAGACAGGCGGAGGG
AACTAAGCCGGAGGAAGAAGAGGAGTCTGAGAAGTCTATGTCAGAGGTGA
ATGATGAGGATGATGATGAAGAATGCAGTGGCGAGGTTTTTTTTGGGGAT
GTTTTGATTNTTAGTTTGACTTGTTATCATTGTTATGTGGTTCTTCTTGA
ATTTGTTTGTTGATTTATTGTTTTTGGTTCTGTGCAGGATGATGATGATG
AATANAAAGTGAAGGAAGAATATAGCATAGTCATGGTAGGCTGTGANCAT
GTTTCAAACACATATGNTAATGCTTTGTGCCTTCATGTTAATTTTTTTGG
GATGCTTTCATCATCTTCATCATCATGGTAGAAAATCATGGGTGCTCTCC
CTCGACATTTTCTTATGCCTGCCTTTCAAGAATAATAGCTGGAGGTGGGA
GATCACTGCTCTTTTGTACTGGGTCTAAAGCTATGATTANCTAAGCGTCC
ATCGTTGGAGAAAATCCATGTTTTTGAGATGATGGGGGGGAAGGG
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