EY649716

Overview
NameEY649716
Unique NameEY649716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: SSRP1_RAT (FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 457
            DPN PKRP SA+ +++   RE+ K DHP   S+  + K  GE WK MS+  K  +  KAE  + EYEK MK Y   + + +K
Sbjct:  543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSK 623          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: SSRP1_MOUSE (FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 457
            DPN PKRP SA+ +++   RE+ K DHP   S+  + K  GE WK MS+  K  +  KAE  + EYEK MK Y   + + +K
Sbjct:  543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSK 623          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: SSRP1_HUMAN (FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 457
            DPN PKRP SA+ +++   RE+ K DHP   S+  + K  GE WK MS+  K  +  KAE  + +YEK MK Y   + E +K
Sbjct:  543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSK 623          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HGB1A_HUMAN (Putative high mobility group protein B1-like 1 OS=Homo sapiens GN=HMGB1L1 PE=5 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 39/105 (37.14%), Postives = 54/105 (51.43%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR-QAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP SAFF+F  E+  + K +HP   S+  V K  GE W + +  DK P   KA K K +YEKD+  Y  + + E  K               +ED+++E
Sbjct:   91 DPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKKKEEEEDEEDE 194          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMG3L_HUMAN (High mobility group protein B3-like-1 OS=Homo sapiens GN=HMGB3L1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-NRRQAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKRP S FF+F  EF  + K  +P   S+  V K  GE W ++++++K PYV K  K K +YEKD+ +Y ++ + +GTK               DE+D EE
Sbjct:   25 DPNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYVTKVAKLK-KYEKDVADYKSKGKLDGTK--GPAKVAWEKMEEEDEEDGEE 125          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGLX_HUMAN (High mobility group protein 1-like 10 OS=Homo sapiens GN=HMG1L10 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.588e-11
Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR-QAEGTKPXXXXXXXXXXXXVNDEDDDEE 523
            DPN PKR  SAFF+F   +R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  + + +  K               +ED+++E
Sbjct:   91 DPNAPKRTPSAFFLFCSAYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDE 194          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: SSRP1_CHICK (FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.686e-11
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 433
            DPN PKRP SA+ +++   RE+ K DHP   S+  + K  GE WK+MS+  K  +  KAE  K +YEK MK Y+
Sbjct:  541 DPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613          
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: NHP6_GIBZE (Non-histone chromosomal protein 6 OS=Gibberella zeae GN=NHP6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.993e-11
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 2
Query:  212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 448
            DPN PKR  SA+  F  E RE  ++++P   S   VGK  GE+WK+++E  +APY AKA   K  YE + + YN  Q E
Sbjct:   20 DPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAYNADQEE 97          
The following BLAST results are available for this feature:
BLAST of EY649716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
SSRP1_RAT2.103e-1142.68FACT complex subunit SSRP1 OS=Rattus norvegicus GN... [more]
SSRP1_MOUSE2.103e-1142.68FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp... [more]
SSRP1_HUMAN2.103e-1142.68FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP... [more]
HGB1A_HUMAN2.103e-1137.14Putative high mobility group protein B1-like 1 OS=... [more]
HMG3L_HUMAN2.747e-1139.05High mobility group protein B3-like-1 OS=Homo sapi... [more]
HMGLX_HUMAN3.588e-1136.19High mobility group protein 1-like 10 OS=Homo sapi... [more]
SSRP1_CHICK4.686e-1145.95FACT complex subunit SSRP1 OS=Gallus gallus GN=SSR... [more]
NHP6_GIBZE7.993e-1144.30Non-histone chromosomal protein 6 OS=Gibberella ze... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-G01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649716 ID=EY649716; Name=EY649716; organism=Citrus sinensis; type=EST; length=945bp
CCACGCGTCCGCCGCTATTCACATCTGCGTCTCTCTCTTTTTCTCTTTCC
TCTTTTTCTCTCATTTGAAGCCCTAACCCTAGCTCTATCTTTCTTCAGAA
ACAGGATTTGAAATGAAAGGAGGTAAATCAAAGTCAGACACCAGAAACGC
CAAGCTCTCTGTGAACAAGAAGCCTGCCAAAGCTGGACGAAAATCGGGAA
AGGCAGCTAAGGACCCGAACAAGCCAAAGAGGCCAGCCAGCGCCTTCTTT
GTTTTCATGGAAGAATTCCGTGAACAATACAAGAAGGATCATCCTAAGAA
CAAATCAGTTGCTGCTGTTGGTAAAGCTGGTGGTGAGAAATGGAAGTCAA
TGTCTGAAGCTGATAAAGCACCGTATGTTGCTAAGGCAGAGAAGCGCAAG
GTTGAGTATGAGAAGGATATGAAAAACTACAATAGGAGACAGGCGGAGGG
AACTAAGCCGGAGGAAGAAGAGGAGTCTGAGAAGTCTATGTCAGAGGTGA
ATGATGAGGATGATGATGAAGAATGCAGTGGCGAGGTTTTTTTTGGGGAT
GTTTTGATTNTTAGTTTGACTTGTTATCATTGTTATGTGGTTCTTCTTGA
ATTTGTTTGTTGATTTATTGTTTTTGGTTCTGTGCAGGATGATGATGATG
AATANAAAGTGAAGGAAGAATATAGCATAGTCATGGTAGGCTGTGANCAT
GTTTCAAACACATATGNTAATGCTTTGTGCCTTCATGTTAATTTTTTTGG
GATGCTTTCATCATCTTCATCATCATGGTAGAAAATCATGGGTGCTCTCC
CTCGACATTTTCTTATGCCTGCCTTTCAAGAATAATAGCTGGAGGTGGGA
GATCACTGCTCTTTTGTACTGGGTCTAAAGCTATGATTANCTAAGCGTCC
ATCGTTGGAGAAAATCCATGTTTTTGAGATGATGGGGGGGAAGGG
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