EY649716
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: SSRP1_RAT (FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11 Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 2 Query: 212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 457 DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y + + +K Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSK 623
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: SSRP1_MOUSE (FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11 Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 2 Query: 212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 457 DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE + EYEK MK Y + + +K Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSK 623
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: SSRP1_HUMAN (FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11 Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 2 Query: 212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 457 DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE + +YEK MK Y + E +K Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSK 623
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HGB1A_HUMAN (Putative high mobility group protein B1-like 1 OS=Homo sapiens GN=HMGB1L1 PE=5 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11 Identity = 39/105 (37.14%), Postives = 54/105 (51.43%), Query Frame = 2 Query: 212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR-QAEGTKPXXXXXXXXXXXXVNDEDDDEE 523 DPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK P KA K K +YEKD+ Y + + E K +ED+++E Sbjct: 91 DPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKKKEEEEDEEDE 194
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMG3L_HUMAN (High mobility group protein B3-like-1 OS=Homo sapiens GN=HMGB3L1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11 Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 2 Query: 212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY-NRRQAEGTKPXXXXXXXXXXXXVNDEDDDEE 523 DPN PKRP S FF+F EF + K +P S+ V K GE W ++++++K PYV K K K +YEKD+ +Y ++ + +GTK DE+D EE Sbjct: 25 DPNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYVTKVAKLK-KYEKDVADYKSKGKLDGTK--GPAKVAWEKMEEEDEEDGEE 125
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: HMGLX_HUMAN (High mobility group protein 1-like 10 OS=Homo sapiens GN=HMG1L10 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.588e-11 Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 2 Query: 212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR-QAEGTKPXXXXXXXXXXXXVNDEDDDEE 523 DPN PKR SAFF+F +R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y + + + K +ED+++E Sbjct: 91 DPNAPKRTPSAFFLFCSAYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDE 194
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: SSRP1_CHICK (FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 4.686e-11 Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 2 Query: 212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 433 DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK+MS+ K + KAE K +YEK MK Y+ Sbjct: 541 DPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613
BLAST of EY649716 vs. ExPASy Swiss-Prot
Match: NHP6_GIBZE (Non-histone chromosomal protein 6 OS=Gibberella zeae GN=NHP6 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.993e-11 Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 2 Query: 212 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 448 DPN PKR SA+ F E RE ++++P S VGK GE+WK+++E +APY AKA K YE + + YN Q E Sbjct: 20 DPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAYNADQEE 97 The following BLAST results are available for this feature:
BLAST of EY649716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY649716 ID=EY649716; Name=EY649716; organism=Citrus sinensis; type=EST; length=945bpback to top |