EY702826

Overview
NameEY702826
Unique NameEY702826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5044 contig Csv1_Contig5044:1..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_BACAH (Glucose-1-phosphate adenylyltransferase OS=Bacillus thuringiensis (strain Al Hakam) GN=glgC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.306e-23
Identity = 59/176 (33.52%), Postives = 91/176 (51.70%), Query Frame = 2
Query:  347 LGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            + ++L GG G+RL  LTK  AKPA P G  YR+ID   SNC N  I  + +LTQ+    L+ ++    A ++        V VL          W+ GTA A+ Q L    ++     L L+GDH+Y+MDY + +  H E +AD+++S + +    A+ F  M  +EE   + F +
Sbjct:    8 VAMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELHNYIGIGNAWDLDRVSGG--VTVLPPYAESSGVKWYTGTASAIYQNLNYLSQYEPDYVLILSGDHIYKMDYSKMLDYHIEKEADVSISVIEVPWDEASRFGIMNTNEEMEIVEFEE 181          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_THEM4 (Glucose-1-phosphate adenylyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glgC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.085e-22
Identity = 65/182 (35.71%), Postives = 95/182 (52.20%), Query Frame = 2
Query:  338 RSVLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSDNQR 883
            ++V+ +IL GG GTRL  LT+K AKPA   G  YRLID   SNC+N  I KI VLTQ+    LNRH+      ++   + +  V +L    + +   W+ GTADAV   +   + ++    + L+GDH+Y MDY   +  H    A  T++ + +    A  F  M  D E R I F +  +
Sbjct:    2 KNVVALILAGGQGTRLGVLTEKIAKPAVQFGGKYRLIDFTMSNCVNSGIYKIGVLTQYKPHLLNRHIGIGKPWDLD--RKDGGVTILQPYSTEKVGVWYKGTADAVYSNIEFVDSYSPDYVVILSGDHIYSMDYNELVDYHVAKSALGTVACMEVPLSEANRFGIMVTDLENRIIEFQEKPK 181          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_KOCRD (Glucose-1-phosphate adenylyltransferase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=glgC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.085e-22
Identity = 63/173 (36.42%), Postives = 97/173 (56.07%), Query Frame = 2
Query:  338 RSVLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAY--ASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEE 850
            + VL I+L GG G RL PLT+ RAKPA P    YRLID   SN +N    +I VLTQ+ S SL+RHLS  +  ++ +G Y     V  + AQQ      WF G+A+A+ Q + L ++ +    + +  DH+YRMD+   ++ H E+ A  T++ +    +   +F  ++ D +
Sbjct:    5 KKVLAIVLAGGEGKRLMPLTEDRAKPAVPFAGGYRLIDFALSNLVNSGYLQIVVLTQYKSHSLDRHLSETWRLSTQLGNY-----VTSVPAQQR-RGKDWFLGSANAIYQSMNLIDDADPDIVVVVGADHVYRMDFADMVEKHIESGAKATVAGVRQPMEMVKSFGVIETDPQ 171          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_BACCR (Glucose-1-phosphate adenylyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=glgC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.417e-22
Identity = 58/176 (32.95%), Postives = 91/176 (51.70%), Query Frame = 2
Query:  347 LGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            + ++L GG G+RL  LTK  AKPA P G  YR+ID   SNC N  I  + +LTQ+    L+ ++    A ++        V VL          W+ GTA A+ Q L    ++     L L+GDH+Y+MDY + +  H E ++D+++S + +    A+ F  M  +EE   + F +
Sbjct:    8 VAMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELHNYIGIGNAWDLDRVSGG--VTVLPPYAESSGVKWYTGTASAIYQNLNYLSQYEPEYVLILSGDHIYKMDYSKMLDYHIEKESDVSISVIEVPWDEASRFGIMNTNEEMEIVEFEE 181          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_CLOD6 (Glucose-1-phosphate adenylyltransferase OS=Clostridium difficile (strain 630) GN=glgC PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.199e-21
Identity = 59/179 (32.96%), Postives = 95/179 (53.07%), Query Frame = 2
Query:  338 RSVLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            + +L +IL GG G+RL   TK+ AKPA   G  YR+ID   SNC N  I  + VLTQ+    LN H+     S+    +    V VL    + +  +W++GTA A+ Q +   + +N    L L+GDH+Y+MDY + ++ H+E  +  T++ + +    A+ F  M  +E+     F +
Sbjct:    3 KEMLAMILAGGQGSRLGVFTKRIAKPAVSFGGKYRIIDFVLSNCSNSGIDTVGVLTQYRPLILNSHI--GMGSHWDLDRINGGVYVLQPFMNEKEGNWYNGTAHAIYQNMDFVDTYNPEYVLILSGDHIYKMDYSKMLKFHKEKGSKATIAVIEVPWDEASRFGIMNTNEDSSIYEFEE 179          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_BACLD (Glucose-1-phosphate adenylyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=glgC PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.567e-21
Identity = 56/179 (31.28%), Postives = 91/179 (50.84%), Query Frame = 2
Query:  347 LGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSDNQR 883
            + ++L GG G+RL  LTK  AKPA P G  YR+ID   SNC N  I  + VLTQ+    LN ++      ++   +N+  V +L+         W+ GTA A+ +     +E      L L+GDH+Y+MDY + ++ H E  AD T++ + +    A  F  +  +++     F +  +
Sbjct:    6 VAMLLAGGKGSRLNALTKNLAKPAVPFGGKYRIIDFALSNCANSGIHHVGVLTQYQPLLLNSYIGIGEPWDLD--RNDGGVSILSPYAEASEVKWYKGTASAIYENRHFLKELQPEHVLILSGDHIYKMDYGKMLEYHAEKQADATIAVIEVSWAEAGRFGILHTNDKMEITSFEEKPK 182          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_THELT (Glucose-1-phosphate adenylyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glgC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.774e-21
Identity = 65/183 (35.52%), Postives = 92/183 (50.27%), Query Frame = 2
Query:  338 RSVLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSDNQRR 886
            R VL +IL GG G RL  LT+K AKPA P G  YRLID   SNC+N  I  + VLTQ+    LN H++     ++   K    V +L          W+ GTA+AV Q +   +  +    L L+GDH+Y MDY   I  H    A+ T++ + +  +    F  M  D + R + F +  +R
Sbjct:    2 RKVLALILAGGHGKRLGVLTEKIAKPAVPFGGKYRLIDFTLSNCVNSGIYHVGVLTQYRPHLLNNHINIGRPWDLDRKKGG--VTILPPYLGGV-AGWYRGTANAVYQNIEYVDSADPDFVLILSGDHVYAMDYNDIIDFHILKGAEGTIACIEVPPEETNRFGIMMTDLDSRIVDFEEKPQR 181          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGL1_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit (Fragment) OS=Triticum aestivum GN=AGA.1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  707 LAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSDNQR 883
            L+GDHLYRMDY  F+Q+HR+ DA I++  LP+D   A+ F  MKID+ GR I FS+  R
Sbjct:    5 LSGDHLYRMDYMDFVQSHRQRDAGISICCLPIDGSRASDFGLMKIDDTGRVISFSEKPR 63          
The following BLAST results are available for this feature:
BLAST of EY702826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_BACAH8.306e-2333.52Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
GLGC_THEM41.085e-2235.71Glucose-1-phosphate adenylyltransferase OS=Thermos... [more]
GLGC_KOCRD1.085e-2236.42Glucose-1-phosphate adenylyltransferase OS=Kocuria... [more]
GLGC_BACCR1.417e-2232.95Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
GLGC_CLOD61.199e-2132.96Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_BACLD1.567e-2131.28Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
GLGC_THELT7.774e-2135.52Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGL1_WHEAT4.276e-1154.24Glucose-1-phosphate adenylyltransferase large subu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-F11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702826 ID=EY702826; Name=EY702826; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGACACTCTCTCTCCCACACACTCACTCAGGCTCAGCTCGC
TTAACGGTTACTGTTAACGTTAACATATGGCGAGTATGGCGTCGATTGGA
TCGCTCAAAGTTCCGTCATCTCCGTCAACCGCAGCAACGTCGTCTAACTC
CAACAATCACAGGCGCAGGAGTGTGGTTAAACGACTGGCGTTCTCGTCGT
CTCAGCTCTCCGGTGACAAGATTTTTTCTAAAGCTGTCACTGGTGATCGG
CGAAACGAGAGGCGTCCGATCGTTGTGTCTCCTCAAGCGGTGTCGGATTC
GAAAAATTCGCAGACTTGCCTTGATCCTGAAGCCAGTCGAAGTGTTTTGG
GGATTATACTTGGAGGTGGAGCAGGGACTCGCTTGTATCCACTTACGAAG
AAGAGGGCAAAGCCTGCTGGTCCATTGGGAGCTAATTACAGGCTGATTGA
TATTCCTGCGAGCAATTGTTTGAATAGGAACATTTCAAAGATCTATGTTC
TCACTCAATTCAATTCTGCGTCCCTCAATCGGCACCTGTCGAGGGCGTAT
GCTAGCAACATGGGTGGTTACAAGAATGAAAGATTTGTTGAAGTTCTTGC
AGCACAGCAGAGTCCAGAGAATCCCAGTTGGTTTCACGGTACAGCTGATG
CTGTGATGCAGTATTTGTGGCTCTTTGAGGAGCACAATGTTCTGGAATTT
CTCGGTCTTGCTGGTGATCATTTGTACCGAATGGACTACGAGAGATTTAT
TCAGGCACACAGAGAAACTGATGCCGATATCACACTATCTGCGCTGCCAA
TGGATGACAAACCGGCTACTGCCTTTTGTCCTATGAAGATCGATGAAGAG
GGACGCAGTATTGGATTTTCGGACAACCAAAGGAGA
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