EY702826

Overview
NameEY702826
Unique NameEY702826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_BURPP (Glucose-1-phosphate adenylyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=glgC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.510e-32
Identity = 77/180 (42.78%), Postives = 101/180 (56.11%), Query Frame = 2
Query:  329 EASRSVLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGF 868
            +  R+ L I+L GG GTRL PLT KR KPA   G  YR+ID   SNCLN  I +I V+TQ+ + SL RHL R ++   G  +   F+++  AQQ  E   W+ GTADAV Q L +         + LAGDH+Y+MDY R I  H E+ AD T+  + +    A AF  M +D   R   F
Sbjct:    9 DLQRTTLAIVLAGGRGTRLGPLTNKRVKPAVHFGGKYRIIDFALSNCLNSGIRRIAVVTQYKAHSLLRHLQRGWSFLRG--EMGEFIDLWPAQQRVEGAHWYRGTADAVFQNLDIIRSIRPKYVVVLAGDHIYKMDYTRMIADHAESGADCTVGCIEVPRMEAVAFGVMHVDANRRVTDF 186          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_SALTI (Glucose-1-phosphate adenylyltransferase OS=Salmonella typhi GN=glgC PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.972e-32
Identity = 78/193 (40.41%), Postives = 111/193 (57.51%), Query Frame = 2
Query:  290 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGF 868
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPA   G  +R+ID   SNCLN  I +I V+TQ+ S +L +H+ R +  ++   +   FV++L AQQ  +  +W+ GTADAV Q L +   +     + LAGDH+Y+ DY R +  H E  A  T++ +P+  K ATAF  M +DE  + I F
Sbjct:    2 VSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW--SLFSEEMNEFVDLLPAQQRMKGENWYRGTADAVTQNLDIIRCYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIKEATAFGVMAVDENDKIIDF 192          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBPA (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio parahaemolyticus GN=glgC1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.394e-32
Identity = 75/177 (42.37%), Postives = 108/177 (61.02%), Query Frame = 2
Query:  344 VLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            VLG+IL GG G+RL PLT+ R+KP+ P G +YRLID   +N +N ++ +IYVLTQF S SL  HL + +  N+ G   +RF++ + AQ       W+ GTADA+ Q L   E     +      DH+Y+MD ++ +  H E  A +T+SAL M  K A+ F  +++D EGR IGF +
Sbjct:    4 VLGMILAGGEGSRLRPLTESRSKPSVPFGGSYRLIDFALNNFVNADLMRIYVLTQFKSQSLFHHLKKGW--NINGI-TDRFIDPIPAQMR-TGKRWYEGTADAIYQNLRFMELEEPDQVCIFGSDHIYKMDIKQMLNFHTEKKASLTVSALRMPLKEASQFGVIEVDAEGRMIGFEE 176          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBCH (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio cholerae GN=glgC1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.495e-32
Identity = 72/177 (40.68%), Postives = 109/177 (61.58%), Query Frame = 2
Query:  344 VLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            VLG+IL GG G+RL PLT+ R KPA P G +YRLID   +N +N ++ +IYVLTQF S SL  H+ + +  N+ G   +RF++++ AQ   +   W+ GTADA+ Q L   E     +      DH+Y+MD  + +  HR  +A++T+SAL M    A+ F  +++DE G+ +GF +
Sbjct:    4 VLGMILAGGEGSRLKPLTETRTKPAVPFGGSYRLIDFALNNFVNADLMRIYVLTQFKSQSLYIHMKKGW--NLSGI-TDRFIDIIPAQMR-DGKRWYEGTADAIYQNLRFVEIVAPDQVCIFGSDHIYKMDIRQMLDFHRRMEAELTVSALRMPISQASQFGVIEVDENGKMVGFEE 176          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_RHOBA (Glucose-1-phosphate adenylyltransferase OS=Rhodopirellula baltica GN=glgC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.789e-32
Identity = 71/179 (39.66%), Postives = 111/179 (62.01%), Query Frame = 2
Query:  338 RSVLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            R  + +IL GG G+RL PLT+ RAKPA P+G  YR+ID   SNCLN ++ ++ +LTQ+ + SL+RH++ A+ +       E F++V+  QQ  ++ +W+ GTADAV Q ++  E       + LAGDHLY+M+YE  +  H    AD+T+ AL +  + A  F  M++D + R + F +
Sbjct:   23 RQTVTVILAGGRGSRLEPLTRDRAKPAVPIGGAYRIIDFVLSNCLNSDMRRLLLLTQYKAQSLDRHINVAWRNYFCRELGE-FIDVVPPQQRIDD-NWYQGTADAVYQNIYAIEREAPEYVVILAGDHLYKMNYESMVNFHHRKGADVTVGALRVSREEARQFGVMQVDTDNRLVEFQE 199          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_METFK (Glucose-1-phosphate adenylyltransferase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=glgC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.789e-32
Identity = 72/180 (40.00%), Postives = 110/180 (61.11%), Query Frame = 2
Query:  335 SRSVLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            +++ + +IL GG G+RL  LT   AKPA P G  +R+ID P SNC+N  + +I V+TQ+ + +L +H+ R +    G +    FVE+L AQQ  +   W+ GTADAV Q L +  + N+   L LAGDH+Y+MDY + + AH    AD+T++ + +  K A+AF  M +DE  R + F +
Sbjct:   16 TKNTVALILAGGKGSRLRDLTNWTAKPAVPFGGKFRIIDFPLSNCINSGVRRIGVVTQYKAHTLIQHIQRGWGFLRGEFNE--FVELLPAQQRIQE-EWYKGTADAVFQNLDILRQTNIEFVLILAGDHVYKMDYGQMLAAHVRNKADMTVACINVPLKEASAFGVMGVDENDRVVDFEE 192          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_VIBFM (Glucose-1-phosphate adenylyltransferase OS=Vibrio fischeri (strain MJ11) GN=glgC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.279e-31
Identity = 72/177 (40.68%), Postives = 108/177 (61.02%), Query Frame = 2
Query:  344 VLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            VLG+IL GG G+RL PLT+ R KPA P G +YRLID   +N +N ++ +IYVLTQF S SL +H+ + +  N+ G   +RF++ + AQ       W+ GTADA+ Q +   E  +         DH+Y+MD  + +  H++  A +T+SAL M  K A+ F  +++DE G+ IGF +
Sbjct:    4 VLGMILAGGEGSRLRPLTESRTKPAVPFGGSYRLIDFALNNFVNADLMRIYVLTQFKSQSLFQHMKKGW--NVNGI-TDRFIDPVPAQMR-TGKRWYEGTADAIYQNISFIESTDPEHVCIFGSDHIYKMDIRQMLDFHKKKKAALTVSALRMPAKDASGFGVIEVDEHGKMIGFEE 176          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_VIBF1 (Glucose-1-phosphate adenylyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=glgC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.279e-31
Identity = 72/177 (40.68%), Postives = 108/177 (61.02%), Query Frame = 2
Query:  344 VLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            VLG+IL GG G+RL PLT+ R KPA P G +YRLID   +N +N ++ +IYVLTQF S SL +H+ + +  N+ G   +RF++ + AQ       W+ GTADA+ Q +   E  +         DH+Y+MD  + +  H++  A +T+SAL M  K A+ F  +++DE G+ IGF +
Sbjct:    4 VLGMILAGGEGSRLRPLTESRTKPAVPFGGSYRLIDFALNNFVNADLMRIYVLTQFKSQSLFQHMKKGW--NVNGI-TDRFIDPVPAQMR-TGKRWYEGTADAIYQNISFIESTDPEHVCIFGSDHIYKMDIRQMLDFHKKKKAALTVSALRMPAKDASGFGVIEVDEHGKMIGFEE 176          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_SHEFN (Glucose-1-phosphate adenylyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=glgC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.279e-31
Identity = 78/183 (42.62%), Postives = 109/183 (59.56%), Query Frame = 2
Query:  335 SRSVLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE--RFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMD-DKPATAFCPMKIDEEGRSIGFSD 874
            +R    +IL GG G+RLY LT  RAKPA   G  YR+ID P SNC+N  I ++ V+TQ+ S SL RH++R +    G +K E    VE+L A Q     +W+ GTADAV Q + +  +      + L+GDH+YRMDY   + AH E+ A++T+  L    D+ A AF  M++D E R IGF +
Sbjct:   11 TRDTYALILAGGRGSRLYELTDWRAKPALYFGGKYRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVTRGW----GHFKKELGESVEILPASQQTSG-NWYQGTADAVFQNIDIIRQEIPKYVMILSGDHIYRMDYAGLLAAHAESGAEMTVCCLETPIDEAAGAFGVMEVDSEHRVIGFEE 188          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_NITMU (Glucose-1-phosphate adenylyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=glgC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.279e-31
Identity = 72/182 (39.56%), Postives = 110/182 (60.44%), Query Frame = 2
Query:  329 EASRSVLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            + +R+ + +IL GG GTRL  LT  RAKPA P G  +R+ID P SNC+N  I +I V TQ+ + SL  H+ + +    G +  + F+E+L AQQ  E  SW+ GTADAV Q + +   HN    L L GDH+Y+MDY + +  H    A++T++ + +  + A+AF  M + ++GR   F++
Sbjct:   12 QITRNSIAMILAGGRGTRLRQLTDWRAKPAVPFGGKFRIIDFPLSNCVNSGIRRIGVATQYKAQSLISHIQQGWGFLDGRF--QEFIELLPAQQRTEE-SWYQGTADAVYQNIDILRSHNPDYVLILGGDHVYKMDYAKLLADHIAKSAEMTIACIDLPLEEASAFGVMSVTKDGRVTDFTE 190          
The following BLAST results are available for this feature:
BLAST of EY702826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_BURPP1.510e-3242.78Glucose-1-phosphate adenylyltransferase OS=Burkhol... [more]
GLGC_SALTI1.972e-3240.41Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC1_VIBPA4.394e-3242.37Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC1_VIBCH7.495e-3240.68Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_RHOBA9.789e-3239.66Glucose-1-phosphate adenylyltransferase OS=Rhodopi... [more]
GLGC_METFK9.789e-3240.00Glucose-1-phosphate adenylyltransferase OS=Methylo... [more]
GLGC_VIBFM1.279e-3140.68Glucose-1-phosphate adenylyltransferase OS=Vibrio ... [more]
GLGC_VIBF11.279e-3140.68Glucose-1-phosphate adenylyltransferase OS=Vibrio ... [more]
GLGC_SHEFN1.279e-3142.62Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_NITMU1.279e-3139.56Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-F11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702826 ID=EY702826; Name=EY702826; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGACACTCTCTCTCCCACACACTCACTCAGGCTCAGCTCGC
TTAACGGTTACTGTTAACGTTAACATATGGCGAGTATGGCGTCGATTGGA
TCGCTCAAAGTTCCGTCATCTCCGTCAACCGCAGCAACGTCGTCTAACTC
CAACAATCACAGGCGCAGGAGTGTGGTTAAACGACTGGCGTTCTCGTCGT
CTCAGCTCTCCGGTGACAAGATTTTTTCTAAAGCTGTCACTGGTGATCGG
CGAAACGAGAGGCGTCCGATCGTTGTGTCTCCTCAAGCGGTGTCGGATTC
GAAAAATTCGCAGACTTGCCTTGATCCTGAAGCCAGTCGAAGTGTTTTGG
GGATTATACTTGGAGGTGGAGCAGGGACTCGCTTGTATCCACTTACGAAG
AAGAGGGCAAAGCCTGCTGGTCCATTGGGAGCTAATTACAGGCTGATTGA
TATTCCTGCGAGCAATTGTTTGAATAGGAACATTTCAAAGATCTATGTTC
TCACTCAATTCAATTCTGCGTCCCTCAATCGGCACCTGTCGAGGGCGTAT
GCTAGCAACATGGGTGGTTACAAGAATGAAAGATTTGTTGAAGTTCTTGC
AGCACAGCAGAGTCCAGAGAATCCCAGTTGGTTTCACGGTACAGCTGATG
CTGTGATGCAGTATTTGTGGCTCTTTGAGGAGCACAATGTTCTGGAATTT
CTCGGTCTTGCTGGTGATCATTTGTACCGAATGGACTACGAGAGATTTAT
TCAGGCACACAGAGAAACTGATGCCGATATCACACTATCTGCGCTGCCAA
TGGATGACAAACCGGCTACTGCCTTTTGTCCTATGAAGATCGATGAAGAG
GGACGCAGTATTGGATTTTCGGACAACCAAAGGAGA
back to top