EY702826

Overview
NameEY702826
Unique NameEY702826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5044 contig Csv1_Contig5044:1..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_ERWCT (Glucose-1-phosphate adenylyltransferase OS=Erwinia carotovora subsp. atroseptica GN=glgC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.279e-31
Identity = 77/195 (39.49%), Postives = 114/195 (58.46%), Query Frame = 2
Query:  290 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            V++ K+    L  +     + +IL GG GTRL  LT  RAKPA   G  +R+ID   SNCLN  I +I V+TQ+ S +L +H+ R + S +    NE FV++L AQQ      W+ GTADAV Q L +   +     + LAGDH+Y+MDY R +  H E  A+ T++ LP+  + A+AF  M +D++ R + F++
Sbjct:    2 VNNDKHDPLMLARQLPLKSVALILAGGRGTRLKGLTALRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SFLNAEMNE-FVDLLPAQQRYSTDHWYRGTADAVCQNLDIIRRYRAEYMVILAGDHIYKMDYSRMLIDHVEKGAECTVACLPVPLEEASAFGVMSVDKQHRILDFAE 194          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBVY (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio vulnificus (strain YJ016) GN=glgC1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.279e-31
Identity = 73/177 (41.24%), Postives = 108/177 (61.02%), Query Frame = 2
Query:  344 VLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            VLG+IL GG G+RL PLT+ R+KPA P G +YRLID   +N +N ++ +IYVLTQF S SL  H+ + +  N+ G   +RF++ + AQ       W+ GTADA+ Q L   E     +      DH+Y+MD ++ +  H+E  A +T+SAL M    A+ F  +++D EGR +GF +
Sbjct:    4 VLGMILAGGEGSRLRPLTESRSKPAVPFGGSYRLIDFALNNFVNADLMRIYVLTQFKSQSLFHHMKKGW--NINGI-TDRFIDPIPAQMR-TGKRWYEGTADAIYQNLRFMELSEPEQVCIFGSDHIYKMDIKQMLSFHKEKQAALTVSALRMPLAEASQFGVIEVDAEGRMVGFEE 176          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_RHISN (Glucose-1-phosphate adenylyltransferase OS=Rhizobium sp. (strain NGR234) GN=glgC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.670e-31
Identity = 75/178 (42.13%), Postives = 103/178 (57.87%), Query Frame = 2
Query:  335 SRSVLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGF 868
            +R  +  +L GG G+RL  LT +RAKPA   G   R+ID   SN LN  I +I V TQ+ + SL RHL R + +     +NE F ++L A Q      W+ GTADAV Q + + E+H V   + LAGDH+Y+MDYE  +Q H ++ AD+T+  L +    AT F  M +D E R I F
Sbjct:   10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGW-NFFRPERNESF-DILPASQRVSETQWYEGTADAVFQNIDIIEDHGVEYMVILAGDHIYKMDYELMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVDNEDRIIAF 185          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_PECCP (Glucose-1-phosphate adenylyltransferase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=glgC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.670e-31
Identity = 77/195 (39.49%), Postives = 114/195 (58.46%), Query Frame = 2
Query:  290 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            V++ K+    L  +     + +IL GG GTRL  LT  RAKPA   G  +R+ID   SNCLN  I +I V+TQ+ S +L +H+ R + S +    NE FV++L AQQ      W+ GTADAV Q L +   +     + LAGDH+Y+MDY R +  H E  A+ T++ LP+  + A+AF  M +D++ R + F++
Sbjct:    2 VNNDKHDPLMLARQLPLKSVALILAGGRGTRLKGLTALRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SFLNAEMNE-FVDLLPAQQRNATDHWYRGTADAVCQNLDIIRRYRAEYVVILAGDHIYKMDYSRMLIDHVEKGAECTVACLPVPLEEASAFGVMSVDKQHRILDFAE 194          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_SACD2 (Glucose-1-phosphate adenylyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=glgC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31
Identity = 78/198 (39.39%), Postives = 119/198 (60.10%), Query Frame = 2
Query:  320 LDPEA------SRSVLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE--RFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMD-DKPATAFCPMKIDEEGRSIGFSDNQRR 886
            LDP +      +R  + ++L GG G+RL+ LT  RAKPA   G  +R+ID P SNC+N  I +I +LTQ+ + SL RH+ R ++S    +K E   +VE+L A Q   +P+W+ GTADA+ Q L + +       L L+GDH+Y+MDY   I  H ET AD+T+S + +  ++ A +F  M +D++ R I F +  +R
Sbjct:    2 LDPNSRYVSRLTRDTVALVLAGGRGSRLHELTDWRAKPALHFGGKFRIIDFPLSNCVNSGIRRIGILTQYKAHSLIRHVIRGWSS----FKKEFGEYVEILPASQR-YSPNWYQGTADAIYQNLDILQAEAPKYILVLSGDHVYQMDYGAIIAHHVETGADLTVSCIEVPIEEAAGSFGVMTVDDDNRIIRFDEKPQR 194          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_DEIRA (Glucose-1-phosphate adenylyltransferase OS=Deinococcus radiodurans GN=glgC PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31
Identity = 70/180 (38.89%), Postives = 106/180 (58.89%), Query Frame = 2
Query:  344 VLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQ---SPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            VLG+IL GG G+RL PLT+KR+KPA P G+ YR+ID   +N +N  +  +YVLTQ+ + SL  H+ R +    G + ++ F+ ++ AQ         +W+ GTADAV Q + L +          +GDH+Y+M+ E  ++ H ET AD+T++A PM    A  F  M++DE  R   F +
Sbjct:    5 VLGMILAGGQGSRLAPLTQKRSKPAVPFGSKYRIIDFAINNFINSGMFSVYVLTQYKAQSLTEHIQRGW--RFGTFLSDYFITLVPAQMYRFEELGDAWYRGTADAVYQNMHLIDNFEADYVAIFSGDHIYKMNVEHMLEKHIETRADVTIAAYPMPQSQAHQFGVMQVDERWRVTEFHE 182          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_MAGSA (Glucose-1-phosphate adenylyltransferase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=glgC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.848e-31
Identity = 74/196 (37.76%), Postives = 108/196 (55.10%), Query Frame = 2
Query:  296 DSKNSQTCLDPEAS---RSVLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            D     T +D E +   R  L +IL GG G+RL  LT   AKPA P    +R++D   SNC+N  I +I VLTQ+ + SL +H+ R +    G +    F+E+L AQQ  +  +W+ GTADAV Q L +   H     L LAGDH+Y+M Y + +  H    AD+T++ + +  + A  F  M +DE+ R I F +
Sbjct:    3 DPTERGTAIDIEVNDRLRKTLALILAGGRGSRLMDLTDWHAKPAIPFAGKFRIVDFTLSNCINSGIRRIGVLTQYKAHSLLQHIQRGWGFLRGEFNE--FIELLPAQQRTQGENWYKGTADAVFQNLDIIHAHRPEHVLVLAGDHVYKMHYGKMLAHHLAAGADVTVACIEVPLETAKGFGVMAVDEDDRVIRFDE 196          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBVU (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio vulnificus GN=glgC1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 73/177 (41.24%), Postives = 108/177 (61.02%), Query Frame = 2
Query:  344 VLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSD 874
            VLG+IL GG G+RL PLT+ R+KPA P G +YRLID   +N +N ++ +IYVLTQF S SL  H+ + +  N+ G   +RF++ + AQ       W+ GTADA+ Q L   E     +      DH+Y+MD ++ +  H+E  A +T+SAL M    A+ F  +++D EGR +GF +
Sbjct:    4 VLGMILAGGEGSRLRPLTESRSKPAVPFGGSYRLIDFALNNFVNADLMRIYVLTQFKSQSLFHHMKKGW--NINGI-TDRFIDPIPAQMR-TGKRWYEGTADAIYQNLRFMELSEPEQVCIFGSDHIYKMDIKQMLSFHKEKLAALTVSALRMPLAEASQFGVIEVDAEGRMVGFEE 176          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_LACLS (Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=glgC PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.858e-31
Identity = 69/180 (38.33%), Postives = 102/180 (56.67%), Query Frame = 2
Query:  344 VLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSDNQR 883
            +LG+IL GG GTRL  LTK  AKPA P G  YR+ID   SNC N N+  + V+TQ+   +LN H+       + G  +   V +L    S E   WF GT+ AV Q +   ++ N    L L+GDH+Y+MDYE  +++H+E +A +T+S + +  + A+ F  M  D+  R I F +  +
Sbjct:    5 MLGLILAGGQGTRLGKLTKDVAKPAVPFGGRYRIIDFALSNCANSNVKNVGVITQYQPLTLNAHIGNGAPWGLNGINSG--VTILQPYSSQEGSKWFEGTSHAVYQNISYIDQQNPEYVLILSGDHIYKMDYEAMLESHKEREASLTVSVMEVPLEEASRFGIMNTDDNDRIIEFEEKPK 182          
BLAST of EY702826 vs. ExPASy Swiss-Prot
Match: GLGC_LACLM (Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=glgC PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.858e-31
Identity = 70/180 (38.89%), Postives = 102/180 (56.67%), Query Frame = 2
Query:  344 VLGIILGGGAGTRLYPLTKKRAKPAGPLGANYRLIDIPASNCLNRNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNERFVEVLAAQQSPENPSWFHGTADAVMQYLWLFEEHNVLEFLGLAGDHLYRMDYERFIQAHRETDADITLSALPMDDKPATAFCPMKIDEEGRSIGFSDNQR 883
            +LG+IL GG GTRL  LTK  AKPA P G  YR+ID   SNC N N+  + V+TQ+   +LN H+       + G    R V +L    S E   WF GT+ AV Q +   ++ N    L L+GDH+Y+MDYE  +++H+E +A +T+S + +  + A+ F  M  D+  R I F +  +
Sbjct:    5 MLGLILAGGQGTRLGKLTKDVAKPAVPFGGRYRIIDFALSNCANSNVKNVGVITQYQPLTLNAHIGNGAPWGLNGI--NRGVTILQPYFSQEGSKWFEGTSHAVYQNISYIDQQNPEYVLILSGDHIYKMDYEAMLESHKEREASLTVSVMEVPLEEASRFGIMNTDDNDRIIEFEEKPK 182          
The following BLAST results are available for this feature:
BLAST of EY702826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_ERWCT1.279e-3139.49Glucose-1-phosphate adenylyltransferase OS=Erwinia... [more]
GLGC1_VIBVY1.279e-3141.24Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_RHISN1.670e-3142.13Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_PECCP1.670e-3139.49Glucose-1-phosphate adenylyltransferase OS=Pectoba... [more]
GLGC_SACD22.181e-3139.39Glucose-1-phosphate adenylyltransferase OS=Sacchar... [more]
GLGC_DEIRA2.181e-3138.89Glucose-1-phosphate adenylyltransferase OS=Deinoco... [more]
GLGC_MAGSA2.848e-3137.76Glucose-1-phosphate adenylyltransferase OS=Magneto... [more]
GLGC1_VIBVU3.720e-3141.24Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_LACLS4.858e-3138.33Glucose-1-phosphate adenylyltransferase OS=Lactoco... [more]
GLGC_LACLM4.858e-3138.89Glucose-1-phosphate adenylyltransferase OS=Lactoco... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-F11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702826 ID=EY702826; Name=EY702826; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGACACTCTCTCTCCCACACACTCACTCAGGCTCAGCTCGC
TTAACGGTTACTGTTAACGTTAACATATGGCGAGTATGGCGTCGATTGGA
TCGCTCAAAGTTCCGTCATCTCCGTCAACCGCAGCAACGTCGTCTAACTC
CAACAATCACAGGCGCAGGAGTGTGGTTAAACGACTGGCGTTCTCGTCGT
CTCAGCTCTCCGGTGACAAGATTTTTTCTAAAGCTGTCACTGGTGATCGG
CGAAACGAGAGGCGTCCGATCGTTGTGTCTCCTCAAGCGGTGTCGGATTC
GAAAAATTCGCAGACTTGCCTTGATCCTGAAGCCAGTCGAAGTGTTTTGG
GGATTATACTTGGAGGTGGAGCAGGGACTCGCTTGTATCCACTTACGAAG
AAGAGGGCAAAGCCTGCTGGTCCATTGGGAGCTAATTACAGGCTGATTGA
TATTCCTGCGAGCAATTGTTTGAATAGGAACATTTCAAAGATCTATGTTC
TCACTCAATTCAATTCTGCGTCCCTCAATCGGCACCTGTCGAGGGCGTAT
GCTAGCAACATGGGTGGTTACAAGAATGAAAGATTTGTTGAAGTTCTTGC
AGCACAGCAGAGTCCAGAGAATCCCAGTTGGTTTCACGGTACAGCTGATG
CTGTGATGCAGTATTTGTGGCTCTTTGAGGAGCACAATGTTCTGGAATTT
CTCGGTCTTGCTGGTGATCATTTGTACCGAATGGACTACGAGAGATTTAT
TCAGGCACACAGAGAAACTGATGCCGATATCACACTATCTGCGCTGCCAA
TGGATGACAAACCGGCTACTGCCTTTTGTCCTATGAAGATCGATGAAGAG
GGACGCAGTATTGGATTTTCGGACAACCAAAGGAGA
back to top