EY649704 | Citrus Genome Database

Overview


Name	EY649704
Unique Name	EY649704
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	949

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BURCJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=dxs PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.909e-39
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL TI+ P  ++ L  R+L+ LADELRA V+ +VSKTGGHL S+LG +ELT+ALHYVFN P   I+WDVGHQTYPHKILTGR D+MH++RQ DG SG   +SESEYD FGT
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWDVGHQTYPHKILTGRRDQMHSLRQYDGISGFPRRSESEYDTFGT 114

HSP 2 Score: 30.4166 bits (67), Expect = 5.909e-39
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+G  L
Sbjct:  116 HSSTSISAALGMAIGSQL 133

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BURCC (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain MC0-3) GN=dxs PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.909e-39
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL TI+ P  ++ L  R+L+ LADELRA V+ +VSKTGGHL S+LG +ELT+ALHYVFN P   I+WDVGHQTYPHKILTGR D+MH++RQ DG SG   +SESEYD FGT
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWDVGHQTYPHKILTGRRDQMHSLRQYDGISGFPRRSESEYDTFGT 114

HSP 2 Score: 30.4166 bits (67), Expect = 5.909e-39
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+G  L
Sbjct:  116 HSSTSISAALGMAIGSQL 133

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BURCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain AU 1054) GN=dxs PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 5.909e-39
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL TI+ P  ++ L  R+L+ LADELRA V+ +VSKTGGHL S+LG +ELT+ALHYVFN P   I+WDVGHQTYPHKILTGR D+MH++RQ DG SG   +SESEYD FGT
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWDVGHQTYPHKILTGRRDQMHSLRQYDGISGFPRRSESEYDTFGT 114

HSP 2 Score: 30.4166 bits (67), Expect = 5.909e-39
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+G  L
Sbjct:  116 HSSTSISAALGMAIGSQL 133

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BURA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain MC40-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.909e-39
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL TI+ P  ++ L  R+L+ LADELRA V+ +VSKTGGHL S+LG +ELT+ALHYVFN P   I+WDVGHQTYPHKILTGR D+MH++RQ DG SG   +SESEYD FGT
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWDVGHQTYPHKILTGRRDQMHSLRQYDGISGFPRRSESEYDTFGT 114

HSP 2 Score: 30.4166 bits (67), Expect = 5.909e-39
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+G  L
Sbjct:  116 HSSTSISAALGMAIGSQL 133

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_ERYLH (1-deoxy-D-xylulose-5-phosphate synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=dxs PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.697e-39
Identity = 72/117 (61.54%), Postives = 90/117 (76.92%), Query Frame = 1

Query:  358 SQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            S RP TPLLDT++YP  ++ L   +L+QL+DELRA++I  V  TGGHLGS LGV+ELT A+HYVFN P+  ++WDVGHQ YPHKILTGR D++ T+RQ  G SG   +SESEYD FG
Sbjct:    2 SARPDTPLLDTVSYPEDLRKLEPGQLRQLSDELRAEMISAVGVTGGHLGSGLGVVELTAAIHYVFNTPEDRLIWDVGHQCYPHKILTGRRDRIRTLRQGGGLSGFTKRSESEYDPFG 118

HSP 2 Score: 28.1054 bits (61), Expect = 7.697e-39
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLK 770
            HSSTSISA LG AV   LK
Sbjct:  121 HSSTSISAGLGFAVANKLK 139

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS2_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.003e-38
Identity = 73/119 (61.34%), Postives = 90/119 (75.63%), Query Frame = 1

Query:  358 SQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            + RP TP LD +  P+ +K L+ REL+ LADELRA+ I  VS TGGHLG+ LGV+ELTVALH +F+AP+  I+WDVGHQ YPHKILTGR D++ T+RQ  G SG   +SES YDCFG G
Sbjct:    2 TDRPCTPTLDRVTLPVDIKGLTDRELRSLADELRAETISAVSVTGGHLGAGLGVVELTVALHAIFDAPRDKIIWDVGHQCYPHKILTGRRDRIRTLRQGGGLSGFTKRSESPYDCFGAG 120

HSP 2 Score: 26.1794 bits (56), Expect = 1.003e-38
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA +G A  R++
Sbjct:  121 HSSTSISAAVGFAAAREM 138

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_MESSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhizobium sp. (strain BNC1) GN=dxs PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.888e-38
Identity = 70/119 (58.82%), Postives = 91/119 (76.47%), Query Frame = 1

Query:  355 HSQRPP-TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            H + PP TPLL+ + +P  +K +   +L QLA+ELRA++I  VS+TGGHLG+ LGV+ELTVALHY+F+ P   ++WDVGHQ YPHKILTGR D++ T+RQ DG SG   +SESEYD FG
Sbjct:   13 HLKSPPETPLLNRVRFPSDLKQIPEEDLPQLAEELRAEMIDAVSQTGGHLGAGLGVVELTVALHYIFDTPHDRLIWDVGHQAYPHKILTGRRDRIRTLRQEDGLSGFTKRSESEYDPFG 131

HSP 2 Score: 31.187 bits (69), Expect = 2.888e-38
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMAV R+L
Sbjct:  134 HSSTSISAGLGMAVAREL 151

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS1_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Jannaschia sp. (strain CCS1) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.889e-38
Identity = 72/117 (61.54%), Postives = 89/117 (76.07%), Query Frame = 1

Query:  358 SQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            S RP TPLLD +  P  +K LS  +LK+LADELRA++I+ VSKTGGH G+ LGV+ELTVALH VF+ P+  ++WDV HQ YPHKILTGR D+M T+RQ DG SG   +SES +D FG
Sbjct:    2 SDRPSTPLLDNVQSPNDLKGLSDFDLKRLADELRAEMIWTVSKTGGHFGAGLGVVELTVALHSVFDTPRDKLVWDVSHQCYPHKILTGRRDQMLTIRQKDGLSGFTKRSESPFDPFG 118

HSP 2 Score: 31.187 bits (69), Expect = 2.889e-38
Identity = 15/18 (83.33%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LG AV RDL
Sbjct:  121 HSSTSISAALGFAVARDL 138

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RHOCS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.763e-38
Identity = 69/114 (60.53%), Postives = 84/114 (73.68%), Query Frame = 1

Query:  373 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            TPLLDT+N P  ++ L   +L+Q ADELR + I  VS TGGHLG+ LGV+ELTVALHYVFN P   ++WDVGHQ YPHKILTGR D++ T+R   G SG   ++ESEYD FG G
Sbjct:    7 TPLLDTVNTPEDLRKLDPSQLRQFADELRTETINAVSVTGGHLGAGLGVVELTVALHYVFNTPADRLIWDVGHQCYPHKILTGRRDRIRTLRMGGGLSGFTKRAESEYDPFGAG 120

HSP 2 Score: 33.8834 bits (76), Expect = 3.763e-38
Identity = 16/17 (94.12%), Postives = 16/17 (94.12%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRD 764
            HSSTSISA LGMAVGRD
Sbjct:  121 HSSTSISAALGMAVGRD 137

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_GLUOX (1-deoxy-D-xylulose-5-phosphate synthase OS=Gluconobacter oxydans GN=dxs PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 8.317e-38
Identity = 70/111 (63.06%), Postives = 87/111 (78.38%), Query Frame = 1

Query:  376 PLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            P LD + +P  M+NLS+ +LKQLADELR++ +  VS TGGHLG+SLGV+ELTVALH VFN P   I+WDVGHQ YPHKILTGR D++ T+RQ +G SG   ++ESEYD FG
Sbjct:   15 PELDRVRFPADMRNLSVDQLKQLADELRSETVDAVSTTGGHLGASLGVVELTVALHAVFNTPDDRIIWDVGHQAYPHKILTGRRDRIRTLRQPEGLSGFTRRAESEYDPFG 125

HSP 2 Score: 28.8758 bits (63), Expect = 8.317e-38
Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLK 770
            HSSTSISA LGMAV   L+
Sbjct:  128 HSSTSISAGLGMAVAHHLR 146

The following BLAST results are available for this feature:

BLAST of EY649704 vs. ExPASy Swiss-Prot

BLAST of EY649704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
DXS_BURCJ	5.909e-39	65.77	1-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol...	[more]
DXS_BURCC	5.909e-39	65.77	1-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol...	[more]
DXS_BURCA	5.909e-39	65.77	1-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol...	[more]
DXS_BURA4	5.909e-39	65.77	1-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol...	[more]
DXS_ERYLH	7.697e-39	61.54	1-deoxy-D-xylulose-5-phosphate synthase OS=Erythro...	[more]
DXS2_RHOS4	1.003e-38	61.34	1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo...	[more]
DXS_MESSB	2.888e-38	58.82	1-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhi...	[more]
DXS1_JANSC	2.889e-38	61.54	1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Janna...	[more]
DXS_RHOCS	3.763e-38	60.53	1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodosp...	[more]
DXS_GLUOX	8.317e-38	63.06	1-deoxy-D-xylulose-5-phosphate synthase OS=Glucono...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-100-002-F01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY649704 ID=EY649704; Name=EY649704; organism=Citrus sinensis; type=EST; length=949bp
CCACGCGTCCGGCACTGAATACATTTACTGTGAGAAGATGACTGACCAGT
CGCGAGTGTTTTTAATTATATACTGATTTGCCGTCGTTAGCATATTATTC
TTCACTCACTGCGTGATGTTTTCTTTTCTGGGTTGTTCTATGCAATAGCT
GTTATGGCTCTCTCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAAC
AAATTCGGGTCCCCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAG
CAGCTCTTTTTTCCCATTTCTCACACAAGCTCGACAATCATCAGATACAG
CTCAAGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGA
GTATCACTCACAAAGACCACCAACACCTCTCTTGGACACCATAAACTATC
CAATTCACATGAAAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGAT
GAGTTGCGGGCCGATGTCATATTCAATGTTTCGAAAACCGGGGGTCACTT
GGGCTCAAGTCTTGGTGTGATTGAGCTTACCGTGGCCCTTCATTATGTTT
TCAATGCTCCCAAAGNACCGATACTGTGGGATGTCGGTCATCAGACTTAC
CCTCATAAAATCTTGACTGGGAGAATGGATAAGATGCATACAATGAGGCA
AACAGATGGCCCTTCTGGGATTCACTAAAAGTCTGAAAGTGAATATGATT
GCTTTGGAACCGGCACAGTTCTACTAGTATCTCTGCCCGATTGGGAATGG
CTGTGGGTAGGGACCTTAAAGAANAAAAAAAATGGGGNTGCTGGTATGGG
GAGGTGGCCTGACTGCAGGCCAGCCTATGAACCTGGACAACGCTGGGACC
TAAATCTGACTGATTGTAATTCTATGAAAACAACGGGTTCTTACCCATGG
TACTTAGATGGCCCATCCACCTGAGGTGCTTGACATGCTCTAACAATGG