EY649704

Overview
NameEY649704
Unique NameEY649704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length949
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_MARMS (1-deoxy-D-xylulose-5-phosphate synthase OS=Marinomonas sp. (strain MWYL1) GN=dxs PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.234e-33
Identity = 63/122 (51.64%), Postives = 84/122 (68.85%), Query Frame = 1
Query:  349 EYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            E  + RP TPLLD +N P  ++     +L  L  ELR  ++++V +TGGH G+ LGV+ELTVALHY++N P+  I+WDVGHQ YPHKILTGR + +  +RQ +G SG   + ESEYD FG G
Sbjct:    4 EIPTARPDTPLLDEVNSPADLRAFKKEQLPALVRELREFMLYSVGQTGGHFGAGLGVVELTVALHYLYNTPEDRIVWDVGHQAYPHKILTGRREALLNIRQENGISGFPKRDESEYDTFGVG 125          

HSP 2 Score: 26.1794 bits (56), Expect = 4.234e-33
Identity = 14/24 (58.33%), Postives = 17/24 (70.83%), Query Frame = 3
Query:  714 HSSTSISARLGMAV-GRDLKEXKK 782
            HSSTSI A LGM++  R LK  +K
Sbjct:  126 HSSTSIGAALGMSLAARQLKTGRK 149          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_NEIMB (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria meningitidis serogroup B GN=dxs PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.513e-33
Identity = 62/115 (53.91%), Postives = 86/115 (74.78%), Query Frame = 1
Query:  370 PTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            P+PLLD I+ P  ++ L  ++L +LA ELR  ++ +V +TGGH  S+LG +ELT+ALHYV++ P+  ++WDVGHQ+YPHKILTGR ++MHTMRQ  G +G   + ESEYD FG G
Sbjct:    3 PSPLLDLIDSPQDLRRLDKKQLPRLAGELRTFLLESVGQTGGHFASNLGAVELTIALHYVYDTPEDKLVWDVGHQSYPHKILTGRKNQMHTMRQYGGLAGFPKRCESEYDAFGVG 117          

HSP 2 Score: 24.6386 bits (52), Expect = 5.513e-33
Identity = 12/18 (66.67%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSI A LGMA    L
Sbjct:  118 HSSTSIGAALGMAAADKL 135          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_NEIM0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria meningitidis serogroup C (strain 053442) GN=dxs PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.513e-33
Identity = 62/115 (53.91%), Postives = 86/115 (74.78%), Query Frame = 1
Query:  370 PTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            P+PLLD I+ P  ++ L  ++L +LA ELR  ++ +V +TGGH  S+LG +ELT+ALHYV++ P+  ++WDVGHQ+YPHKILTGR ++MHTMRQ  G +G   + ESEYD FG G
Sbjct:    3 PSPLLDLIDSPQDLRRLDKKQLPRLAGELRTFLLESVGQTGGHFASNLGAVELTIALHYVYDTPEDKLVWDVGHQSYPHKILTGRKNQMHTMRQYGGLAGFPKRCESEYDAFGVG 117          

HSP 2 Score: 24.6386 bits (52), Expect = 5.513e-33
Identity = 12/18 (66.67%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSI A LGMA    L
Sbjct:  118 HSSTSIGAALGMAAADKL 135          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS2_GEOMG (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.180e-33
Identity = 63/112 (56.25%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            LLDTI  P  +KN+   EL  LADE+R  +I  VS+TGGHL S+LG +EL+VALHY F++P   ++WDVGHQ Y HKILTGR +  HT RQ  G SG   +SES +D FG G
Sbjct:    4 LLDTITGPADLKNIPREELPGLADEIRRFLIETVSQTGGHLASNLGAVELSVALHYCFDSPADKLIWDVGHQAYTHKILTGRRESFHTQRQYKGISGFPKRSESPHDAFGAG 115          

HSP 2 Score: 31.5722 bits (70), Expect = 7.180e-33
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLK 770
            HSSTSISA LGMA  +DLK
Sbjct:  116 HSSTSISAGLGMAAAQDLK 134          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_VEREI (1-deoxy-D-xylulose-5-phosphate synthase OS=Verminephrobacter eiseniae (strain EF01-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.181e-33
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 1
Query:  376 PLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            PLL+TI+ P  ++ L+  +LK LA ELR  V+ +VS+TGGHL S+LG +ELTVALH+VF  P   ++WDVGHQTY HKILTGR ++MHT+RQ  G SG   + ES YD FGT
Sbjct:    7 PLLETIDDPAQLRQLARAQLKVLAAELRGFVLESVSRTGGHLSSNLGTVELTVALHHVFQTPHDRLVWDVGHQTYAHKILTGRRERMHTLRQQGGISGFPQRGESVYDTFGT 118          

HSP 2 Score: 26.5646 bits (57), Expect = 7.181e-33
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLK 770
            HSSTSISA LGMA+    K
Sbjct:  120 HSSTSISAALGMALAAKRK 138          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_SYNWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=dxs PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.350e-33
Identity = 62/112 (55.36%), Postives = 84/112 (75.00%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            +L+TIN P  +K LS+ E+ QLA+E+R  ++ +V+K GGHL S+LGV+EL++ALH VF++P+  I+WDVGHQ Y HKILTGR ++M T+RQ  G SG     ESEYD F TG
Sbjct:    4 ILNTINSPRDLKKLSLPEMTQLANEIRQLLVKSVAKCGGHLASNLGVVELSLALHTVFDSPEDKIIWDVGHQAYVHKILTGRREQMSTLRQYGGISGFPKVEESEYDAFNTG 115          

HSP 2 Score: 32.3426 bits (72), Expect = 9.350e-33
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLK 770
            HSSTSISA LGMA+ RDL+
Sbjct:  116 HSSTSISAALGMALARDLQ 134          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_NITEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosomonas eutropha (strain C91) GN=dxs PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 9.355e-33
Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = 1
Query:  376 PLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            PLLD I  P  ++NL   +L QLADELR+ +I +V+KTGGHL S+LG IELT+ALHY+F+ P   ++WDVGHQTY HKILTGR   M  +R   G +G   + ESEYD FGT
Sbjct:    3 PLLDRIEIPAQLRNLKRSQLPQLADELRSFLIESVAKTGGHLSSNLGTIELTIALHYIFDTPFDRLVWDVGHQTYAHKILTGRRTGMAHLRMQGGIAGFPRRDESEYDAFGT 114          

HSP 2 Score: 29.261 bits (64), Expect = 9.355e-33
Identity = 14/23 (60.87%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLKEXKK 782
            HSSTSISA LGMAV   + + K+
Sbjct:  116 HSSTSISAALGMAVAARINKIKQ 138          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_NEIG1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=dxs PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.218e-32
Identity = 62/115 (53.91%), Postives = 86/115 (74.78%), Query Frame = 1
Query:  370 PTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            P+PLL  I+ P  ++ L  ++L +LA ELRA ++ +V +TGGH  S+LG +ELT+ALHYV++ P+  ++WDVGHQ+YPHKILTGR ++MHTMRQ  G +G   + ESEYD FG G
Sbjct:    3 PSPLLHLIDSPQDLRRLDKKQLPRLAGELRAFLLESVGQTGGHFASNLGAVELTIALHYVYDTPEDKLVWDVGHQSYPHKILTGRKNQMHTMRQYGGLAGFPKRCESEYDAFGVG 117          

HSP 2 Score: 24.6386 bits (52), Expect = 1.218e-32
Identity = 12/18 (66.67%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSI A LGMA    L
Sbjct:  118 HSSTSIGAALGMAAADKL 135          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_PELUB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelagibacter ubique GN=dxs PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.586e-32
Identity = 63/109 (57.80%), Postives = 85/109 (77.98%), Query Frame = 1
Query:  382 LDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            L  IN+P  ++ LS  +L+++++E+R ++I  VS+TGGHLG+ LGV+ELTVALHYVF+ P   ++WDVGHQTYPHKILTGR  K+ T+RQ +G SG   +SESEYD FG
Sbjct:    7 LKDINFPSDLRKLSENDLQEVSNEVRKEMIDAVSETGGHLGAGLGVVELTVALHYVFDTPNDRLIWDVGHQTYPHKILTGRKSKIKTLRQGNGLSGFTKRSESEYDPFG 115          

HSP 2 Score: 25.0238 bits (53), Expect = 1.586e-32
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSIS+ LGMA    L
Sbjct:  118 HSSTSISSALGMAEANKL 135          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BORPD (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=dxs PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.586e-32
Identity = 67/113 (59.29%), Postives = 83/113 (73.45%), Query Frame = 1
Query:  373 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            T LLD I+ P  ++ L  RELK LA+ELR  V+ +VS+TGGHL S+LG +ELT+ALH VF+ P   I+WDVGHQ+YPHKILTGR   M ++RQ  G SG   +SESEYD FGT
Sbjct:    3 TELLDRIHSPDDVRQLDRRELKALAEELRGFVLESVSRTGGHLSSNLGTVELTLALHRVFDTPHDRIVWDVGHQSYPHKILTGRRAGMASLRQEGGISGFPKRSESEYDAFGT 115          

HSP 2 Score: 27.335 bits (59), Expect = 1.586e-32
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  714 HSSTSISARLGMAV 755
            HSSTSISA LGMAV
Sbjct:  117 HSSTSISAALGMAV 130          
The following BLAST results are available for this feature:
BLAST of EY649704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_MARMS4.234e-3351.641-deoxy-D-xylulose-5-phosphate synthase OS=Marinom... [more]
DXS_NEIMB5.513e-3353.911-deoxy-D-xylulose-5-phosphate synthase OS=Neisser... [more]
DXS_NEIM05.513e-3353.911-deoxy-D-xylulose-5-phosphate synthase OS=Neisser... [more]
DXS2_GEOMG7.180e-3356.251-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geoba... [more]
DXS_VEREI7.181e-3358.041-deoxy-D-xylulose-5-phosphate synthase OS=Vermine... [more]
DXS_SYNWW9.350e-3355.361-deoxy-D-xylulose-5-phosphate synthase OS=Syntrop... [more]
DXS_NITEC9.355e-3357.141-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_NEIG11.218e-3253.911-deoxy-D-xylulose-5-phosphate synthase OS=Neisser... [more]
DXS_PELUB1.586e-3257.801-deoxy-D-xylulose-5-phosphate synthase OS=Pelagib... [more]
DXS_BORPD1.586e-3259.291-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-F01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649704 ID=EY649704; Name=EY649704; organism=Citrus sinensis; type=EST; length=949bp
CCACGCGTCCGGCACTGAATACATTTACTGTGAGAAGATGACTGACCAGT
CGCGAGTGTTTTTAATTATATACTGATTTGCCGTCGTTAGCATATTATTC
TTCACTCACTGCGTGATGTTTTCTTTTCTGGGTTGTTCTATGCAATAGCT
GTTATGGCTCTCTCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAAC
AAATTCGGGTCCCCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAG
CAGCTCTTTTTTCCCATTTCTCACACAAGCTCGACAATCATCAGATACAG
CTCAAGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGA
GTATCACTCACAAAGACCACCAACACCTCTCTTGGACACCATAAACTATC
CAATTCACATGAAAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGAT
GAGTTGCGGGCCGATGTCATATTCAATGTTTCGAAAACCGGGGGTCACTT
GGGCTCAAGTCTTGGTGTGATTGAGCTTACCGTGGCCCTTCATTATGTTT
TCAATGCTCCCAAAGNACCGATACTGTGGGATGTCGGTCATCAGACTTAC
CCTCATAAAATCTTGACTGGGAGAATGGATAAGATGCATACAATGAGGCA
AACAGATGGCCCTTCTGGGATTCACTAAAAGTCTGAAAGTGAATATGATT
GCTTTGGAACCGGCACAGTTCTACTAGTATCTCTGCCCGATTGGGAATGG
CTGTGGGTAGGGACCTTAAAGAANAAAAAAAATGGGGNTGCTGGTATGGG
GAGGTGGCCTGACTGCAGGCCAGCCTATGAACCTGGACAACGCTGGGACC
TAAATCTGACTGATTGTAATTCTATGAAAACAACGGGTTCTTACCCATGG
TACTTAGATGGCCCATCCACCTGAGGTGCTTGACATGCTCTAACAATGG
back to top