EY649704 | Citrus Genome Database

Overview


Name	EY649704
Unique Name	EY649704
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	949

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_DEHSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Dehalococcoides sp. (strain CBDB1) GN=dxs PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.065e-32
Identity = 61/112 (54.46%), Postives = 82/112 (73.21%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            LLDTIN P  +K LS+ EL++LA ++R +++  V+  GGHL SSLGV+ELT+ALH VF +PK  I+WDVGHQ+Y HK+LTGR ++  T+RQ  G SG   + ES +D FG G
Sbjct:   18 LLDTINSPSDLKKLSLDELRELAVQIREELVNRVTLNGGHLASSLGVVELTIALHRVFESPKDKIIWDVGHQSYAHKLLTGRREQFATLRQHGGLSGFTCRDESPHDPFGAG 129

HSP 2 Score: 31.5722 bits (70), Expect = 2.065e-32
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            H+STSISA LGMAV RDL
Sbjct:  130 HASTSISAGLGMAVARDL 147

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_LEPIN (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptospira interrogans GN=dxs PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.065e-32
Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            LLD INYP  ++N+ + +L Q+  E+R  +I  +S  GGH  S+LGV+ELTVALHYVF+ PK  ++WDVGHQTYPHKILTGR DK++T+R+ +G SG   + ES YD + TG
Sbjct:    7 LLDRINYPAELRNIPLEKLPQICKEVRNYIIDTLSGIGGHFASNLGVVELTVALHYVFDTPKDRLVWDVGHQTYPHKILTGRKDKLNTVRKFNGLSGFPKREESPYDLYNTG 118

HSP 2 Score: 24.2534 bits (51), Expect = 2.065e-32
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            H+ TSIS  LG A  RDL
Sbjct:  119 HAGTSISQALGEAAARDL 136

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_LEPIC (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dxs PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.065e-32
Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            LLD INYP  ++N+ + +L Q+  E+R  +I  +S  GGH  S+LGV+ELTVALHYVF+ PK  ++WDVGHQTYPHKILTGR DK++T+R+ +G SG   + ES YD + TG
Sbjct:    7 LLDRINYPAELRNIPLEKLPQICKEVRNYIIDTLSGIGGHFASNLGVVELTVALHYVFDTPKDRLVWDVGHQTYPHKILTGRKDKLNTVRKFNGLSGFPKREESPYDLYNTG 118

HSP 2 Score: 24.2534 bits (51), Expect = 2.065e-32
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            H+ TSIS  LG A  RDL
Sbjct:  119 HAGTSISQALGEAAARDL 136

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_DEHSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Dehalococcoides sp. (strain BAV1) GN=dxs PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.065e-32
Identity = 61/112 (54.46%), Postives = 82/112 (73.21%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            LLDTIN P  +K LS+ EL++LA ++R +++  V+  GGHL SSLGV+ELT+ALH VF +PK  I+WDVGHQ+Y HK+LTGR ++  T+RQ  G SG   + ES +D FG G
Sbjct:    4 LLDTINSPSDLKKLSLDELRELAVQIREELVNRVTLNGGHLASSLGVVELTIALHRVFESPKDKIIWDVGHQSYAHKLLTGRREQFATLRQHGGLSGFTCRDESPHDPFGAG 115

HSP 2 Score: 31.5722 bits (70), Expect = 2.065e-32
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            H+STSISA LGMAV RDL
Sbjct:  116 HASTSISAGLGMAVARDL 133

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_ACIBY (1-deoxy-D-xylulose-5-phosphate synthase OS=Acinetobacter baumannii (strain AYE) GN=dxs PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.689e-32
Identity = 61/122 (50.00%), Postives = 86/122 (70.49%), Query Frame = 1

Query:  349 EYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            E  +QRP TPLLD I++P  ++ L   +L Q+ADELR  +++   ++GGH G++LGV+ELTVALHY FN P   ++WDVGHQ YPHKILTGR +++ T+R  +G +    + ES +D FG G
Sbjct:    8 EIPTQRPVTPLLDAIDHPQQLRQLEHSQLLQVADELRQYILYAAGQSGGHFGANLGVVELTVALHYCFNTPNDRLVWDVGHQAYPHKILTGRREQITTIRAKNGLAAFPAREESVFDTFGVG 129

HSP 2 Score: 25.409 bits (54), Expect = 2.689e-32
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGR 761
            HSST+ISA LGM++ R
Sbjct:  130 HSSTAISAGLGMSLAR 145

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_ACIBS (1-deoxy-D-xylulose-5-phosphate synthase OS=Acinetobacter baumannii (strain SDF) GN=dxs PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.689e-32
Identity = 61/122 (50.00%), Postives = 86/122 (70.49%), Query Frame = 1

Query:  349 EYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            E  +QRP TPLLD I++P  ++ L   +L Q+ADELR  +++   ++GGH G++LGV+ELTVALHY FN P   ++WDVGHQ YPHKILTGR +++ T+R  +G +    + ES +D FG G
Sbjct:    8 EIPTQRPVTPLLDAIDHPQQLRQLEHSQLLQVADELRQYILYAAGQSGGHFGANLGVVELTVALHYCFNTPNDRLVWDVGHQAYPHKILTGRREQITTIRAKNGLAAFPAREESVFDTFGVG 129

HSP 2 Score: 25.409 bits (54), Expect = 2.689e-32
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGR 761
            HSST+ISA LGM++ R
Sbjct:  130 HSSTAISAGLGMSLAR 145

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_AZOSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Azoarcus sp. (strain BH72) GN=dxs PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.690e-32
Identity = 66/114 (57.89%), Postives = 79/114 (69.30%), Query Frame = 1

Query:  370 PTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            P P L+ I  P  ++    REL Q+A ELRA +I +VSKTGGHL S+LG +ELT+ALHYVFN P   I+WDVGHQTY HKILTGR + M  +R   G SG   + ESEYD FGT
Sbjct:    3 PYPHLERIGSPADLRATERRELAQVASELRAFLIESVSKTGGHLSSNLGTVELTIALHYVFNTPDDRIVWDVGHQTYGHKILTGRREAMSGLRHWGGISGFPRRCESEYDTFGT 116

HSP 2 Score: 28.4906 bits (62), Expect = 2.690e-32
Identity = 16/24 (66.67%), Postives = 18/24 (75.00%), Query Frame = 3

Query:  714 HSSTSISARLGMAV-GRDLKEXKK 782
            HSSTSISA LGMAV  RD  E ++
Sbjct:  118 HSSTSISAALGMAVAARDRGEDRR 141

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_METFK (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=dxs PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.691e-32
Identity = 63/112 (56.25%), Postives = 84/112 (75.00%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            LL++IN P  ++ L  +EL +LA +LRA +I +V++TGGHL S+LGV+ELT+ALHYVFN P+  ++WDVGHQTYPHKILTGR   M  +R+  G +G   + ES YD FGTG
Sbjct:    4 LLESINSPEDLRRLDRKELHELARQLRAFLINSVAQTGGHLSSNLGVVELTIALHYVFNTPEDRVVWDVGHQTYPHKILTGRRKDMGNLRRPGGIAGFPRRDESIYDTFGTG 115

HSP 2 Score: 27.335 bits (59), Expect = 2.691e-32
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 3

Query:  714 HSSTSISARLGMAV 755
            HSSTSISA LGMAV
Sbjct:  116 HSSTSISAALGMAV 129

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_NITMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dxs PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.691e-32
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 1

Query:  376 PLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            PLL+TI  P+ ++ L  + L QLADELR  ++ +V+KTGGHL S+LG +ELT+ALHYVFN P   ++WDVGHQTY HKILTGR + M  +R   G +G   + ESEYD FGT
Sbjct:    3 PLLNTITDPVKLRALDRKLLPQLADELRQFLVESVAKTGGHLSSNLGTVELTIALHYVFNTPYDRLVWDVGHQTYVHKILTGRREGMSKLRMRGGIAGFPRRDESEYDAFGT 114

HSP 2 Score: 28.1054 bits (61), Expect = 2.691e-32
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLKEXKK 782
            HSSTSISA LGMAV    +  K+
Sbjct:  116 HSSTSISAALGMAVASQWEGKKR 138

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_AGRVS (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dxs PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.502e-32
Identity = 60/117 (51.28%), Postives = 87/117 (74.36%), Query Frame = 1

Query:  358 SQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            + +P TPLLD + +P  ++ +  +++ Q+A ELR ++I  VS TGGHLG+ LGV+ELT+A+H VFN P+  +++DVGHQ YPHKILTGR +++ T+RQ  G SG   ++ESEYD FG
Sbjct:    2 TSKPNTPLLDQVVFPSDLRKIEDKDMPQVARELRDEMIDAVSVTGGHLGAGLGVVELTLAIHKVFNTPEDRLIFDVGHQCYPHKILTGRRERIRTLRQEHGLSGFTKRAESEYDPFG 118

HSP 2 Score: 28.8758 bits (63), Expect = 3.502e-32
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMAV  +L
Sbjct:  121 HSSTSISAGLGMAVAAEL 138

The following BLAST results are available for this feature:

BLAST of EY649704 vs. ExPASy Swiss-Prot

BLAST of EY649704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
DXS_DEHSC	2.065e-32	54.46	1-deoxy-D-xylulose-5-phosphate synthase OS=Dehaloc...	[more]
DXS_LEPIN	2.065e-32	55.36	1-deoxy-D-xylulose-5-phosphate synthase OS=Leptosp...	[more]
DXS_LEPIC	2.065e-32	55.36	1-deoxy-D-xylulose-5-phosphate synthase OS=Leptosp...	[more]
DXS_DEHSB	2.065e-32	54.46	1-deoxy-D-xylulose-5-phosphate synthase OS=Dehaloc...	[more]
DXS_ACIBY	2.689e-32	50.00	1-deoxy-D-xylulose-5-phosphate synthase OS=Acineto...	[more]
DXS_ACIBS	2.689e-32	50.00	1-deoxy-D-xylulose-5-phosphate synthase OS=Acineto...	[more]
DXS_AZOSB	2.690e-32	57.89	1-deoxy-D-xylulose-5-phosphate synthase OS=Azoarcu...	[more]
DXS_METFK	2.691e-32	56.25	1-deoxy-D-xylulose-5-phosphate synthase OS=Methylo...	[more]
DXS_NITMU	2.691e-32	56.25	1-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso...	[more]
DXS_AGRVS	3.502e-32	51.28	1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-002-F01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY649704 ID=EY649704; Name=EY649704; organism=Citrus sinensis; type=EST; length=949bp
CCACGCGTCCGGCACTGAATACATTTACTGTGAGAAGATGACTGACCAGT
CGCGAGTGTTTTTAATTATATACTGATTTGCCGTCGTTAGCATATTATTC
TTCACTCACTGCGTGATGTTTTCTTTTCTGGGTTGTTCTATGCAATAGCT
GTTATGGCTCTCTCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAAC
AAATTCGGGTCCCCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAG
CAGCTCTTTTTTCCCATTTCTCACACAAGCTCGACAATCATCAGATACAG
CTCAAGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGA
GTATCACTCACAAAGACCACCAACACCTCTCTTGGACACCATAAACTATC
CAATTCACATGAAAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGAT
GAGTTGCGGGCCGATGTCATATTCAATGTTTCGAAAACCGGGGGTCACTT
GGGCTCAAGTCTTGGTGTGATTGAGCTTACCGTGGCCCTTCATTATGTTT
TCAATGCTCCCAAAGNACCGATACTGTGGGATGTCGGTCATCAGACTTAC
CCTCATAAAATCTTGACTGGGAGAATGGATAAGATGCATACAATGAGGCA
AACAGATGGCCCTTCTGGGATTCACTAAAAGTCTGAAAGTGAATATGATT
GCTTTGGAACCGGCACAGTTCTACTAGTATCTCTGCCCGATTGGGAATGG
CTGTGGGTAGGGACCTTAAAGAANAAAAAAAATGGGGNTGCTGGTATGGG
GAGGTGGCCTGACTGCAGGCCAGCCTATGAACCTGGACAACGCTGGGACC
TAAATCTGACTGATTGTAATTCTATGAAAACAACGGGTTCTTACCCATGG
TACTTAGATGGCCCATCCACCTGAGGTGCTTGACATGCTCTAACAATGG