EY649704 | Citrus Genome Database

Overview


Name	EY649704
Unique Name	EY649704
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	949

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_SACD2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dxs PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.319e-38
Identity = 69/119 (57.98%), Postives = 90/119 (75.63%), Query Frame = 1

Query:  358 SQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            +QRP TPLLD ++ P  ++ LS ++L QLA ELR  +++ V +TGGH G+ LGV+ELTVALHYV N P   ++WDVGHQTYPHKILTGR ++M ++RQ DG SG   +SESE+D FG G
Sbjct:    7 TQRPNTPLLDVVDTPARLRELSEKQLPQLAKELREYLLYTVGQTGGHFGAGLGVVELTVALHYVLNTPDDRLVWDVGHQTYPHKILTGRREQMSSIRQLDGLSGFPKRSESEFDTFGVG 125

HSP 2 Score: 28.1054 bits (61), Expect = 8.319e-38
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLKEXKK 782
            HSSTSISA LGMA+  ++ + ++
Sbjct:  126 HSSTSISAALGMALAAEMTDNQQ 148

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BURTA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.321e-38
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL TI+ P  ++ L  R+L+ LADELRA V+ +VSKTGGHL S+LG +ELT+ALHYVFN P   I+WDVGHQTYPHKILTGR D M T+RQ DG SG   +SESEYD FGT
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRIVWDVGHQTYPHKILTGRRDGMKTLRQFDGISGFPRRSESEYDTFGT 114

HSP 2 Score: 30.0314 bits (66), Expect = 8.321e-38
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+G  L
Sbjct:  116 HSSTSISAALGMAIGSKL 133

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BURPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei GN=dxs PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.321e-38
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL TI+ P  ++ L  R+L+ LADELRA V+ +VSKTGGHL S+LG +ELT+ALHYVFN P   I+WDVGHQTYPHKILTGR D M T+RQ DG SG   +SESEYD FGT
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRIVWDVGHQTYPHKILTGRRDGMKTLRQFDGISGFPRRSESEYDTFGT 114

HSP 2 Score: 30.0314 bits (66), Expect = 8.321e-38
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+G  L
Sbjct:  116 HSSTSISAALGMAIGSKL 133

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BURP6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 668) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.321e-38
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL TI+ P  ++ L  R+L+ LADELRA V+ +VSKTGGHL S+LG +ELT+ALHYVFN P   I+WDVGHQTYPHKILTGR D M T+RQ DG SG   +SESEYD FGT
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRIVWDVGHQTYPHKILTGRRDGMKTLRQFDGISGFPRRSESEYDTFGT 114

HSP 2 Score: 30.0314 bits (66), Expect = 8.321e-38
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+G  L
Sbjct:  116 HSSTSISAALGMAIGSKL 133

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BURP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1710b) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.321e-38
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL TI+ P  ++ L  R+L+ LADELRA V+ +VSKTGGHL S+LG +ELT+ALHYVFN P   I+WDVGHQTYPHKILTGR D M T+RQ DG SG   +SESEYD FGT
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRIVWDVGHQTYPHKILTGRRDGMKTLRQFDGISGFPRRSESEYDTFGT 114

HSP 2 Score: 30.0314 bits (66), Expect = 8.321e-38
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+G  L
Sbjct:  116 HSSTSISAALGMAIGSKL 133

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BURP0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.321e-38
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL TI+ P  ++ L  R+L+ LADELRA V+ +VSKTGGHL S+LG +ELT+ALHYVFN P   I+WDVGHQTYPHKILTGR D M T+RQ DG SG   +SESEYD FGT
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRIVWDVGHQTYPHKILTGRRDGMKTLRQFDGISGFPRRSESEYDTFGT 114

HSP 2 Score: 30.0314 bits (66), Expect = 8.321e-38
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+G  L
Sbjct:  116 HSSTSISAALGMAIGSKL 133

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BURMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia mallei GN=dxs PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.321e-38
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL TI+ P  ++ L  R+L+ LADELRA V+ +VSKTGGHL S+LG +ELT+ALHYVFN P   I+WDVGHQTYPHKILTGR D M T+RQ DG SG   +SESEYD FGT
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRIVWDVGHQTYPHKILTGRRDGMKTLRQFDGISGFPRRSESEYDTFGT 114

HSP 2 Score: 30.0314 bits (66), Expect = 8.321e-38
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+G  L
Sbjct:  116 HSSTSISAALGMAIGSKL 133

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS2_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymomonas mobilis GN=dxs2 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.084e-37
Identity = 73/112 (65.18%), Postives = 84/112 (75.00%), Query Frame = 1

Query:  373 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            TPLLD I  P  ++ L    L+QLADELR + I  V  TGGHLGS LGVIELTVALHYVFN PK  ++WDVGHQTYPHKILTGR D++ T+RQ DG SG   ++ESEYD FG
Sbjct:    7 TPLLDKIKTPAELRQLDRNSLRQLADELRKETISAVGVTGGHLGSGLGVIELTVALHYVFNTPKDALVWDVGHQTYPHKILTGRRDRIRTLRQRDGLSGFTQRAESEYDAFG 118

HSP 2 Score: 25.7942 bits (55), Expect = 1.084e-37
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLKE 773
            HSSTSISA LG A+   L +
Sbjct:  121 HSSTSISAALGFAMASKLSD 140

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS1_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymomonas mobilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.084e-37
Identity = 73/112 (65.18%), Postives = 84/112 (75.00%), Query Frame = 1

Query:  373 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            TPLLD I  P  ++ L    L+QLADELR + I  V  TGGHLGS LGVIELTVALHYVFN PK  ++WDVGHQTYPHKILTGR D++ T+RQ DG SG   ++ESEYD FG
Sbjct:    7 TPLLDKIKTPAELRQLDRNSLRQLADELRKETISAVGVTGGHLGSGLGVIELTVALHYVFNTPKDALVWDVGHQTYPHKILTGRRDRIRTLRQRDGLSGFTQRAESEYDAFG 118

HSP 2 Score: 25.7942 bits (55), Expect = 1.084e-37
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLKE 773
            HSSTSISA LG A+   L +
Sbjct:  121 HSSTSISAALGFAMASKLSD 140

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS1_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.084e-37
Identity = 73/115 (63.48%), Postives = 88/115 (76.52%), Query Frame = 1

Query:  364 RPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            RP TPLLD +  P  MK LS  EL++LADE+R++VI  V++TGGHLGSSLGV+ELTVALH VFN P   ++WDVGHQ YPHKILTGR ++M T+RQ  G SG   +SES YD FG
Sbjct:    7 RPETPLLDRVCCPADMKALSDAELERLADEVRSEVISVVAETGGHLGSSLGVVELTVALHAVFNTPTDKLVWDVGHQCYPHKILTGRREQMRTLRQKGGLSGFTKRSESAYDPFG 121

HSP 2 Score: 30.8018 bits (68), Expect = 1.084e-37
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LG A+GR+L
Sbjct:  124 HSSTSISAALGFAMGREL 141

The following BLAST results are available for this feature:

BLAST of EY649704 vs. ExPASy Swiss-Prot

BLAST of EY649704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
DXS_SACD2	8.319e-38	57.98	1-deoxy-D-xylulose-5-phosphate synthase OS=Sacchar...	[more]
DXS_BURTA	8.321e-38	65.77	1-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol...	[more]
DXS_BURPS	8.321e-38	65.77	1-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol...	[more]
DXS_BURP6	8.321e-38	65.77	1-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol...	[more]
DXS_BURP1	8.321e-38	65.77	1-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol...	[more]
DXS_BURP0	8.321e-38	65.77	1-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol...	[more]
DXS_BURMA	8.321e-38	65.77	1-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol...	[more]
DXS2_ZYMMO	1.084e-37	65.18	1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymom...	[more]
DXS1_ZYMMO	1.084e-37	65.18	1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymom...	[more]
DXS1_RHOS4	1.084e-37	63.48	1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-100-002-F01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY649704 ID=EY649704; Name=EY649704; organism=Citrus sinensis; type=EST; length=949bp
CCACGCGTCCGGCACTGAATACATTTACTGTGAGAAGATGACTGACCAGT
CGCGAGTGTTTTTAATTATATACTGATTTGCCGTCGTTAGCATATTATTC
TTCACTCACTGCGTGATGTTTTCTTTTCTGGGTTGTTCTATGCAATAGCT
GTTATGGCTCTCTCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAAC
AAATTCGGGTCCCCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAG
CAGCTCTTTTTTCCCATTTCTCACACAAGCTCGACAATCATCAGATACAG
CTCAAGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGA
GTATCACTCACAAAGACCACCAACACCTCTCTTGGACACCATAAACTATC
CAATTCACATGAAAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGAT
GAGTTGCGGGCCGATGTCATATTCAATGTTTCGAAAACCGGGGGTCACTT
GGGCTCAAGTCTTGGTGTGATTGAGCTTACCGTGGCCCTTCATTATGTTT
TCAATGCTCCCAAAGNACCGATACTGTGGGATGTCGGTCATCAGACTTAC
CCTCATAAAATCTTGACTGGGAGAATGGATAAGATGCATACAATGAGGCA
AACAGATGGCCCTTCTGGGATTCACTAAAAGTCTGAAAGTGAATATGATT
GCTTTGGAACCGGCACAGTTCTACTAGTATCTCTGCCCGATTGGGAATGG
CTGTGGGTAGGGACCTTAAAGAANAAAAAAAATGGGGNTGCTGGTATGGG
GAGGTGGCCTGACTGCAGGCCAGCCTATGAACCTGGACAACGCTGGGACC
TAAATCTGACTGATTGTAATTCTATGAAAACAACGGGTTCTTACCCATGG
TACTTAGATGGCCCATCCACCTGAGGTGCTTGACATGCTCTAACAATGG