EY649704

Overview
NameEY649704
Unique NameEY649704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length949
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_SPHAL (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingopyxis alaskensis GN=dxs PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.412e-37
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = 1
Query:  358 SQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            + RP TPLLDT++ P  ++ L   +L+Q ADELRA++I  V  TGGHLGS LGV+ELT A+HYVF+ P+  ++WDVGHQ YPHKI+TGR D++ T+RQ  G SG   +SESEYD FG
Sbjct:    2 TDRPHTPLLDTVDVPADLRKLKPEDLRQFADELRAEMISAVGTTGGHLGSGLGVVELTTAIHYVFDTPRDKLVWDVGHQCYPHKIITGRRDRIRTLRQGGGLSGFTKRSESEYDPFG 118          

HSP 2 Score: 28.8758 bits (63), Expect = 1.412e-37
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLKE 773
            HSSTSISA LG A+   LK+
Sbjct:  121 HSSTSISAALGFAIANKLKD 140          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_CELJU (1-deoxy-D-xylulose-5-phosphate synthase OS=Cellvibrio japonicus (strain Ueda107) GN=dxs PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.396e-37
Identity = 68/122 (55.74%), Postives = 92/122 (75.41%), Query Frame = 1
Query:  349 EYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            E  + RP TPLLD+I+ P  ++ LS ++L QLADELRA +++ V +TGGH G+ LGV+ELT+ALHYV++ P+  ++WDVGHQTYPHKILT R ++MH++RQ  G SG   + ES YD FG G
Sbjct:    4 EIPTNRPATPLLDSIDSPAELRALSEKQLPQLADELRAFLLYTVGQTGGHFGAGLGVVELTIALHYVYDTPEDRLVWDVGHQTYPHKILTSRRERMHSIRQGGGLSGFPKREESPYDTFGVG 125          

HSP 2 Score: 26.9498 bits (58), Expect = 2.396e-37
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  714 HSSTSISARLGMAVG 758
            HSSTSISA  GMA+G
Sbjct:  126 HSSTSISAAQGMAIG 140          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BURXL (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia xenovorans (strain LB400) GN=dxs PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.396e-37
Identity = 70/111 (63.06%), Postives = 86/111 (77.48%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL TI+ P  ++ L  R+L+ LADELRA V+ +VS+TGGHL S+LG +ELT+ALHYVF+ P   I+WDVGHQTYPHKILTGR D+MHT+RQ  G SG   + ESEYD FGT
Sbjct:    4 LLKTIDDPAALRRLDRRQLQPLADELRAFVLDSVSQTGGHLSSNLGTVELTIALHYVFDTPHDRIVWDVGHQTYPHKILTGRRDQMHTLRQLGGISGFPKRDESEYDTFGT 114          

HSP 2 Score: 31.5722 bits (70), Expect = 2.396e-37
Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLKEXKKWG 788
            HSSTSISA LGMAV   LK   + G
Sbjct:  116 HSSTSISAALGMAVASKLKGDNRMG 140          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_PSEPF (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.067e-37
Identity = 69/122 (56.56%), Postives = 88/122 (72.13%), Query Frame = 1
Query:  349 EYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            E   +RP TPLLD  N P  ++ L   EL+ LADELR ++++ V +TGGH G+ LGVIELT+ALHYVF+ P   ++WDVGHQ YPHKILTGR ++M T+RQ DG +    +SESEYD FG G
Sbjct:    7 EIPRKRPTTPLLDRANTPDGLRRLGEAELETLADELRLELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGHQAYPHKILTGRRERMETLRQKDGIAAFPRRSESEYDTFGVG 128          

HSP 2 Score: 27.7202 bits (60), Expect = 4.067e-37
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLK 770
            HSSTSISA LGMA+   L+
Sbjct:  129 HSSTSISAALGMAIAARLQ 147          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS2_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.296e-37
Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = 1
Query:  358 SQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            + RP TPLLDTI  P   + LS+ +L+QLA E+RA++I  VS TGGHLGS LGV+ELTVALH+VF+ P   I+WDVGHQ YPHKILTGR D++ T+RQ  G SG   + ES YD FG G
Sbjct:    2 TSRPITPLLDTIRGPSDTRGLSVAQLEQLAREVRAEMIDAVSVTGGHLGSGLGVVELTVALHHVFDTPDDRIIWDVGHQCYPHKILTGRRDRIRTLRQGGGLSGFTLREESPYDPFGAG 120          

HSP 2 Score: 29.261 bits (64), Expect = 5.296e-37
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+G  L
Sbjct:  121 HSSTSISAGLGMAIGSAL 138          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS1_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.296e-37
Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = 1
Query:  358 SQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            + RP TPLLDTI  P   + LS+ +L+QLA E+RA++I  VS TGGHLGS LGV+ELTVALH+VF+ P   I+WDVGHQ YPHKILTGR D++ T+RQ  G SG   + ES YD FG G
Sbjct:    2 TSRPITPLLDTIRGPSDTRGLSVAQLEQLAREVRAEMIDAVSVTGGHLGSGLGVVELTVALHHVFDTPDDRIIWDVGHQCYPHKILTGRRDRIRTLRQGGGLSGFTLREESPYDPFGAG 120          

HSP 2 Score: 29.261 bits (64), Expect = 5.296e-37
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+G  L
Sbjct:  121 HSSTSISAGLGMAIGSAL 138          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BARBK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dxs PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.297e-37
Identity = 71/117 (60.68%), Postives = 87/117 (74.36%), Query Frame = 1
Query:  364 RPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            RP TPLLD +  P+ ++ L   +L +LADELRA++I  VS TGGHLG+ LGV+ELT+ALHY+FN P   I+WDVGHQ YPHKILTGR DK+ T+RQ  G SG   +SES YD FG G
Sbjct:    3 RPLTPLLDCVLSPLDLRALPASDLARLADELRAEMIDVVSVTGGHLGAGLGVVELTIALHYIFNTPDDRIIWDVGHQAYPHKILTGRRDKIRTLRQEGGLSGFTKRSESIYDPFGAG 119          

HSP 2 Score: 28.4906 bits (62), Expect = 5.297e-37
Identity = 14/23 (60.87%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLKEXKK 782
            HSSTSISA LGMA+   LK  ++
Sbjct:  120 HSSTSISAGLGMAMASALKAEER 142          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BRUO2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=dxs PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.900e-37
Identity = 70/115 (60.87%), Postives = 86/115 (74.78%), Query Frame = 1
Query:  364 RPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            RP TPLLD +  P  ++ L  R+L QLA+ELR ++I  VS TGGHLG+ LGV+ELTVALH+VFN P   I+WDVGHQ YPHKILTGR D++ T+RQ  G SG   ++ESEYD FG
Sbjct:    3 RPSTPLLDKVPTPDRLRALPERDLPQLAEELRTELIDAVSTTGGHLGAGLGVVELTVALHHVFNTPYDRIIWDVGHQAYPHKILTGRRDRIRTLRQAGGLSGFTKRAESEYDPFG 117          

HSP 2 Score: 30.4166 bits (67), Expect = 6.900e-37
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLKEXKK 782
            HSSTSISA LGMAV  +L   K+
Sbjct:  120 HSSTSISAGLGMAVASELSGEKR 142          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RHILO (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium loti GN=dxs PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.901e-37
Identity = 68/114 (59.65%), Postives = 84/114 (73.68%), Query Frame = 1
Query:  367 PPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            P TPLLD +  P  ++ L   EL QLA ELR +++  VS+TGGHLG+ LGV+ELTVALHYVFN P   ++WDVGHQ YPHKILTGR D++ T+RQ  G SG   ++ESEYD FG
Sbjct:    5 PHTPLLDKVRIPADLRALDESELPQLASELRLELVDAVSRTGGHLGAGLGVVELTVALHYVFNTPDDRLIWDVGHQAYPHKILTGRRDRIRTLRQEGGLSGFTRRAESEYDPFG 118          

HSP 2 Score: 31.187 bits (69), Expect = 6.901e-37
Identity = 15/18 (83.33%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA  RDL
Sbjct:  121 HSSTSISAGLGMAAARDL 138          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_MAGSA (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dxs PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.171e-36
Identity = 66/117 (56.41%), Postives = 87/117 (74.36%), Query Frame = 1
Query:  364 RPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            +P + LLD ++ P  +++ SI EL+QL  E+R ++I +VS TGGHLG+ LGV ELTVALH++F+ P+  ++WDVGHQ YPHKILTGR  +M TMRQ  G SG   +SESEYD FG G
Sbjct:    9 KPSSSLLDRVSSPADIRDFSIEELEQLTYEVRQEMIQSVSFTGGHLGAGLGVAELTVALHHIFDTPRDRLIWDVGHQAYPHKILTGRRGRMRTMRQGGGLSGFTRRSESEYDPFGAG 125          

HSP 2 Score: 35.039 bits (79), Expect = 1.171e-36
Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLK 770
            HSSTSISA LGMAV RDLK
Sbjct:  126 HSSTSISAALGMAVARDLK 144          
The following BLAST results are available for this feature:
BLAST of EY649704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_SPHAL1.412e-3758.121-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS_CELJU2.396e-3755.741-deoxy-D-xylulose-5-phosphate synthase OS=Cellvib... [more]
DXS_BURXL2.396e-3763.061-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_PSEPF4.067e-3756.561-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS2_RHORT5.296e-3760.501-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS1_RHORT5.296e-3760.501-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_BARBK5.297e-3760.681-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_BRUO26.900e-3760.871-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_RHILO6.901e-3759.651-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_MAGSA1.171e-3656.411-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-F01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649704 ID=EY649704; Name=EY649704; organism=Citrus sinensis; type=EST; length=949bp
CCACGCGTCCGGCACTGAATACATTTACTGTGAGAAGATGACTGACCAGT
CGCGAGTGTTTTTAATTATATACTGATTTGCCGTCGTTAGCATATTATTC
TTCACTCACTGCGTGATGTTTTCTTTTCTGGGTTGTTCTATGCAATAGCT
GTTATGGCTCTCTCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAAC
AAATTCGGGTCCCCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAG
CAGCTCTTTTTTCCCATTTCTCACACAAGCTCGACAATCATCAGATACAG
CTCAAGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGA
GTATCACTCACAAAGACCACCAACACCTCTCTTGGACACCATAAACTATC
CAATTCACATGAAAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGAT
GAGTTGCGGGCCGATGTCATATTCAATGTTTCGAAAACCGGGGGTCACTT
GGGCTCAAGTCTTGGTGTGATTGAGCTTACCGTGGCCCTTCATTATGTTT
TCAATGCTCCCAAAGNACCGATACTGTGGGATGTCGGTCATCAGACTTAC
CCTCATAAAATCTTGACTGGGAGAATGGATAAGATGCATACAATGAGGCA
AACAGATGGCCCTTCTGGGATTCACTAAAAGTCTGAAAGTGAATATGATT
GCTTTGGAACCGGCACAGTTCTACTAGTATCTCTGCCCGATTGGGAATGG
CTGTGGGTAGGGACCTTAAAGAANAAAAAAAATGGGGNTGCTGGTATGGG
GAGGTGGCCTGACTGCAGGCCAGCCTATGAACCTGGACAACGCTGGGACC
TAAATCTGACTGATTGTAATTCTATGAAAACAACGGGTTCTTACCCATGG
TACTTAGATGGCCCATCCACCTGAGGTGCTTGACATGCTCTAACAATGG
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