EY649704

Overview
NameEY649704
Unique NameEY649704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length949
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_THEFY (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermobifida fusca (strain YX) GN=dxs PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.853e-23
Identity = 56/107 (52.34%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            LLD+++ P  +K L   +L QLA E+R  +I  V++TGGHLG +LGV+ELT+ALH VF++P+ PIL+D GHQ Y HKILTGR D    +R+  G SG   ++ESE+D
Sbjct:    3 LLDSVHNPDDLKKLPDSQLPQLAAEIREFLISQVARTGGHLGPNLGVVELTIALHRVFDSPRDPILFDTGHQAYVHKILTGRKD-FSKLRKEGGLSGYPSRAESEHD 108          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_PROMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.308e-23
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  382 LDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            L  + +P  +  LSI EL+ +A ++R   +  VS +GGHLG  LGV+ELT+AL+   +     ++WDVGHQ YPHK++TGR    +T+RQ  G +G   + ES +D FG G
Sbjct:    3 LSELTHPNQLHGLSIAELEDVARQIRERHLEVVSTSGGHLGPGLGVVELTLALYQTLDLDHDRVVWDVGHQAYPHKLITGRYGDFNTLRQQGGVAGYLKRCESSFDHFGAG 113          

HSP 2 Score: 28.8758 bits (63), Expect = 2.308e-23
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRD 764
            H+STSISA LGMAV R+
Sbjct:  114 HASTSISAALGMAVARE 130          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_PROM3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9303) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.308e-23
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  382 LDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            L  + +P  +  LSI EL+ +A ++R   +  VS +GGHLG  LGV+ELT+AL+   +     ++WDVGHQ YPHK++TGR    +T+RQ  G +G   + ES +D FG G
Sbjct:    3 LSELTHPNQLHGLSIAELEDVARQIRERHLEVVSTSGGHLGPGLGVVELTLALYQTLDLDHDRVVWDVGHQAYPHKLITGRYGDFNTLRQQGGVAGYLKRCESSFDHFGAG 113          

HSP 2 Score: 28.8758 bits (63), Expect = 2.308e-23
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRD 764
            H+STSISA LGMAV R+
Sbjct:  114 HASTSISAALGMAVARE 130          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_PROMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus GN=dxs PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.004e-23
Identity = 46/111 (41.44%), Postives = 71/111 (63.96%), Query Frame = 1
Query:  382 LDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            L  +++P  +  L+  +L+ +A ++R   +  VS +GGHLG  LGV+ELT+AL+   +     ++WDVGHQ YPHK+LTGR     ++RQ +G +G   +SES +D FG G
Sbjct:    3 LSDVSHPNQLHGLTTAQLEDVACQIRERHLQVVSTSGGHLGPGLGVVELTLALYQTLDLDHDKVVWDVGHQAYPHKLLTGRYGDFDSLRQQNGVAGYLKRSESSFDHFGAG 113          

HSP 2 Score: 30.8018 bits (68), Expect = 3.004e-23
Identity = 15/26 (57.69%), Postives = 20/26 (76.92%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLKEXKKWGC 791
            H+STSISA LGMA+ RD ++ K + C
Sbjct:  114 HASTSISAALGMALARD-RQGKDYKC 138          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_HAMD5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=dxs PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.005e-23
Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  376 PLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            P L     P  ++ L    L +L  ELR+ ++  VS++ GH  S LGVIELT+ALHYV+  P   ++WDVGHQ YPHKILTGR D++  +RQ +G      + ES+YD    G
Sbjct:    9 PTLALAETPESLRLLPKESLPELCSELRSYLLDAVSQSSGHFASGLGVIELTLALHYVYKTPFDHLIWDVGHQAYPHKILTGRRDQIDRIRQKNGLHPFPSREESDYDVLSVG 121          

HSP 2 Score: 26.1794 bits (56), Expect = 3.005e-23
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRD 764
            HSSTSISA LG+AV  +
Sbjct:  122 HSSTSISAGLGLAVAAE 138          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RHOE4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=dxs PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.160e-23
Identity = 52/107 (48.60%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L  I  P  ++ LS  E+ +LADE+R  ++  V+ TGGHLG +LGV+ELT+ALH +F++P+  I++D GHQ Y HKILTGR D+  T+R+  G SG   ++ESE+D
Sbjct:    3 VLARIQGPDDLRQLSHAEMTELADEIREFLVLKVAATGGHLGPNLGVVELTLALHRIFDSPQDAIIFDTGHQAYVHKILTGRQDQFDTLRKQGGLSGYPCRAESEHD 109          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_MYCPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium paratuberculosis GN=dxs PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.160e-23
Identity = 52/107 (48.60%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L+ I  P  +++LS  +L++LA E+R  +I  V+ TGGHLG +LGV+ELT+ALH VF++P  PI++D GHQ Y HK+LTGR  +  ++R+  G SG   +SESE+D
Sbjct:    1 MLEQIRGPADLQHLSTHQLRELAAEIREFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPIIFDTGHQAYVHKMLTGRAHEFESLRKKGGLSGYPSRSESEHD 107          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_MYCGI (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium gilvum (strain PYR-GCK) GN=dxs PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.160e-23
Identity = 54/107 (50.47%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L+ I  P  +++LS  +++ LA E+R  +I  V+ TGGHLG +LGV+ELT+ALH VF++P  PIL+D GHQ Y HK+LTGR     T+R+ DG SG   +SESE+D
Sbjct:    1 MLEQIRGPADLQHLSRAQMEDLAREIRDFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPILFDTGHQAYVHKMLTGRSRDFDTLRKKDGLSGYPSRSESEHD 107          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_MYCA1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium avium (strain 104) GN=dxs PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.160e-23
Identity = 52/107 (48.60%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L+ I  P  +++LS  +L++LA E+R  +I  V+ TGGHLG +LGV+ELT+ALH VF++P  PI++D GHQ Y HK+LTGR  +  ++R+  G SG   +SESE+D
Sbjct:    1 MLEQIRGPADLQHLSTHQLRELAAEIREFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPIIFDTGHQAYVHKMLTGRAHEFESLRKKGGLSGYPSRSESEHD 107          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_FRASC (1-deoxy-D-xylulose-5-phosphate synthase OS=Frankia sp. (strain CcI3) GN=dxs PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.160e-23
Identity = 56/107 (52.34%), Postives = 73/107 (68.22%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            LL TI+ P  +K L   EL  LA E+R  +I  V++TGGHLG +LG +ELT+A+H VF++P   ILWD GHQ+Y HKILTGR D    +RQ  G SG   ++ESE+D
Sbjct:    3 LLSTISSPQDVKRLDHEELATLAAEIRDFLIHAVARTGGHLGPNLGAVELTLAIHRVFDSPFDRILWDTGHQSYVHKILTGRADDFSGLRQRGGLSGYPSRAESEHD 109          
The following BLAST results are available for this feature:
BLAST of EY649704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_THEFY1.853e-2352.341-deoxy-D-xylulose-5-phosphate synthase OS=Thermob... [more]
DXS_PROMM2.308e-2343.241-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_PROM32.308e-2343.241-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_PROMA3.004e-2341.441-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_HAMD53.005e-2345.131-deoxy-D-xylulose-5-phosphate synthase OS=Hamilto... [more]
DXS_RHOE43.160e-2348.601-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoco... [more]
DXS_MYCPA3.160e-2348.601-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCGI3.160e-2350.471-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCA13.160e-2348.601-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_FRASC3.160e-2352.341-deoxy-D-xylulose-5-phosphate synthase OS=Frankia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-F01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649704 ID=EY649704; Name=EY649704; organism=Citrus sinensis; type=EST; length=949bp
CCACGCGTCCGGCACTGAATACATTTACTGTGAGAAGATGACTGACCAGT
CGCGAGTGTTTTTAATTATATACTGATTTGCCGTCGTTAGCATATTATTC
TTCACTCACTGCGTGATGTTTTCTTTTCTGGGTTGTTCTATGCAATAGCT
GTTATGGCTCTCTCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAAC
AAATTCGGGTCCCCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAG
CAGCTCTTTTTTCCCATTTCTCACACAAGCTCGACAATCATCAGATACAG
CTCAAGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGA
GTATCACTCACAAAGACCACCAACACCTCTCTTGGACACCATAAACTATC
CAATTCACATGAAAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGAT
GAGTTGCGGGCCGATGTCATATTCAATGTTTCGAAAACCGGGGGTCACTT
GGGCTCAAGTCTTGGTGTGATTGAGCTTACCGTGGCCCTTCATTATGTTT
TCAATGCTCCCAAAGNACCGATACTGTGGGATGTCGGTCATCAGACTTAC
CCTCATAAAATCTTGACTGGGAGAATGGATAAGATGCATACAATGAGGCA
AACAGATGGCCCTTCTGGGATTCACTAAAAGTCTGAAAGTGAATATGATT
GCTTTGGAACCGGCACAGTTCTACTAGTATCTCTGCCCGATTGGGAATGG
CTGTGGGTAGGGACCTTAAAGAANAAAAAAAATGGGGNTGCTGGTATGGG
GAGGTGGCCTGACTGCAGGCCAGCCTATGAACCTGGACAACGCTGGGACC
TAAATCTGACTGATTGTAATTCTATGAAAACAACGGGTTCTTACCCATGG
TACTTAGATGGCCCATCCACCTGAGGTGCTTGACATGCTCTAACAATGG
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