EY649704

Overview
NameEY649704
Unique NameEY649704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length949
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_COREF (1-deoxy-D-xylulose-5-phosphate synthase OS=Corynebacterium efficiens GN=dxs PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.160e-23
Identity = 52/107 (48.60%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L++I+ P  +K L+  +L+ LA E+R+ ++  V+ TGGHLG +LGV+ELT+ LH VF++P+ PI++D  HQ+Y HKILTGR D   T+RQ  G SG   ++ESE+D
Sbjct:    3 ILNSISTPADLKALAEEDLEVLAGEIRSFLVDKVAATGGHLGPNLGVVELTIGLHRVFDSPREPIIFDTSHQSYVHKILTGRGDAFDTLRQKGGLSGYTSRAESEHD 109          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_CORDI (1-deoxy-D-xylulose-5-phosphate synthase OS=Corynebacterium diphtheriae GN=dxs PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.160e-23
Identity = 53/107 (49.53%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L+ I+ P  +K LS  +L  LA E+R  ++  VS TGGHLG +LGV+ELT+A+H VF++P  PI++D  HQ+Y HKILTGR     T+RQ DG SG   ++ES +D
Sbjct:    3 ILEHISSPADVKTLSYEQLDTLASEIREFLVEKVSATGGHLGPNLGVVELTLAIHRVFSSPSDPIIFDTSHQSYVHKILTGRAGAFDTLRQKDGLSGYTSRAESNHD 109          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_SYNJB (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. GN=dxs PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.907e-23
Identity = 49/113 (43.36%), Postives = 70/113 (61.95%), Query Frame = 1
Query:  382 LDTINYPIHMKNLSIRELKQLADELRADVIFNV--SKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            L  I +P  ++NL++ +L+ LA ++R   +     S  G HLG  LGV+ELT+AL+   +  +  ++WDVGHQ Y HK+LTGR    HT+RQ  G SG   +SES +D FG G
Sbjct:    3 LSDITHPNQLRNLNLSQLRSLARQIRDKHLQTAANSPVGCHLGPGLGVVELTLALYKTLDLDRDKVIWDVGHQAYAHKMLTGRYHNFHTLRQKGGISGYLKRSESRFDHFGAG 115          

HSP 2 Score: 30.0314 bits (66), Expect = 3.907e-23
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRD 764
            H+STSISA LGMA+ RD
Sbjct:  116 HASTSISAALGMAIARD 132          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS2_STRAW (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Streptomyces avermitilis GN=dxs2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.128e-23
Identity = 55/108 (50.93%), Postives = 76/108 (70.37%), Query Frame = 1
Query:  376 PLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            PLL  I  P  +  LS+ +L QLA+E+R  ++  VSKTGGHLG +LGV+ELT+ALH VF++PK  +L+D GHQ+Y HK+LTGR D    ++   G SG   ++ESE+D
Sbjct:    2 PLLTRIRGPRDLDRLSLEQLDQLAEEIRTFLVDAVSKTGGHLGPNLGVVELTIALHRVFDSPKDRVLFDTGHQSYVHKLLTGRQD-FSKLKMKGGLSGYPSQAESEHD 108          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_NOCFA (1-deoxy-D-xylulose-5-phosphate synthase OS=Nocardia farcinica GN=dxs PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.391e-23
Identity = 49/107 (45.79%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L  ++ P  ++ L++ EL++LA+E+R  ++  V+ TGGHLG +LGV+ELT+ALH VF++P  P+++D GHQ Y HKILTGR D+   +R+  G SG   ++ES +D
Sbjct:    3 VLSRVDTPEDVRRLNVAELRELAEEIREFLVRKVAATGGHLGPNLGVVELTIALHRVFDSPADPLIFDTGHQAYVHKILTGRKDRFDDLRKQGGLSGYPSRAESPHD 109          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_LEIXX (1-deoxy-D-xylulose-5-phosphate synthase OS=Leifsonia xyli subsp. xyli GN=dxs PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.391e-23
Identity = 53/107 (49.53%), Postives = 79/107 (73.83%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L++++ P  +  L+ REL QLA E+RA ++ NV+KTGGHLG +LGV+E T+A+H VF++P+  I++D GHQ+Y HK+LTGR D    +RQ  G +G   +SESE+D
Sbjct:    3 ILESVHGPRDLDRLTERELDQLAAEVRAFLVANVAKTGGHLGPNLGVVETTIAIHRVFDSPRDAIVFDTGHQSYVHKLLTGRQD-FSRLRQKGGLAGYPQRSESEHD 108          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_MYCUA (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium ulcerans (strain Agy99) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.041e-23
Identity = 51/107 (47.66%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L  I  P  +++LS  +L++LA E+R  ++  V+ TGGHLG +LGV+ELT+ALH VF++P  PI++D GHQTY HK+LTGR     ++R+  G SG   ++ESE+D
Sbjct:    1 MLQQIRGPADLQHLSQAQLRELAQEIREFLVHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPIIFDTGHQTYVHKMLTGRAQDFESLRKKGGLSGYPCRAESEHD 107          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_MYCSS (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium sp. (strain MCS) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.041e-23
Identity = 52/107 (48.60%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L+ I  P  +++LS   L +LA E+R  +I  V+ TGGHLG +LGV+ELT+ALH VF++P  P+++D GHQ Y HK+LTGR  +  ++R+ DG SG   +SESE+D
Sbjct:    1 MLEQIRGPADLQHLSQSALSELAGEIRQFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPLIFDTGHQAYVHKMLTGRSHEFDSLRKKDGLSGYPSRSESEHD 107          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_MYCSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium sp. (strain KMS) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.041e-23
Identity = 52/107 (48.60%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L+ I  P  +++LS   L +LA E+R  +I  V+ TGGHLG +LGV+ELT+ALH VF++P  P+++D GHQ Y HK+LTGR  +  ++R+ DG SG   +SESE+D
Sbjct:    1 MLEQIRGPADLQHLSQSALSELAGEIRQFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPLIFDTGHQAYVHKMLTGRSHEFDSLRKKDGLSGYPSRSESEHD 107          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_MYCSJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium sp. (strain JLS) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.041e-23
Identity = 52/107 (48.60%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L+ I  P  +++LS   L +LA E+R  +I  V+ TGGHLG +LGV+ELT+ALH VF++P  P+++D GHQ Y HK+LTGR  +  ++R+ DG SG   +SESE+D
Sbjct:    1 MLEQIRGPADLQHLSQSALSELAGEIRQFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPLIFDTGHQAYVHKMLTGRSHEFDSLRKKDGLSGYPSRSESEHD 107          
The following BLAST results are available for this feature:
BLAST of EY649704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_COREF3.160e-2348.601-deoxy-D-xylulose-5-phosphate synthase OS=Coryneb... [more]
DXS_CORDI3.160e-2349.531-deoxy-D-xylulose-5-phosphate synthase OS=Coryneb... [more]
DXS_SYNJB3.907e-2343.361-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS2_STRAW4.128e-2350.931-deoxy-D-xylulose-5-phosphate synthase 2 OS=Strep... [more]
DXS_NOCFA5.391e-2345.791-deoxy-D-xylulose-5-phosphate synthase OS=Nocardi... [more]
DXS_LEIXX5.391e-2349.531-deoxy-D-xylulose-5-phosphate synthase OS=Leifson... [more]
DXS_MYCUA7.041e-2347.661-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCSS7.041e-2348.601-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCSK7.041e-2348.601-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCSJ7.041e-2348.601-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-F01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649704 ID=EY649704; Name=EY649704; organism=Citrus sinensis; type=EST; length=949bp
CCACGCGTCCGGCACTGAATACATTTACTGTGAGAAGATGACTGACCAGT
CGCGAGTGTTTTTAATTATATACTGATTTGCCGTCGTTAGCATATTATTC
TTCACTCACTGCGTGATGTTTTCTTTTCTGGGTTGTTCTATGCAATAGCT
GTTATGGCTCTCTCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAAC
AAATTCGGGTCCCCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAG
CAGCTCTTTTTTCCCATTTCTCACACAAGCTCGACAATCATCAGATACAG
CTCAAGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGA
GTATCACTCACAAAGACCACCAACACCTCTCTTGGACACCATAAACTATC
CAATTCACATGAAAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGAT
GAGTTGCGGGCCGATGTCATATTCAATGTTTCGAAAACCGGGGGTCACTT
GGGCTCAAGTCTTGGTGTGATTGAGCTTACCGTGGCCCTTCATTATGTTT
TCAATGCTCCCAAAGNACCGATACTGTGGGATGTCGGTCATCAGACTTAC
CCTCATAAAATCTTGACTGGGAGAATGGATAAGATGCATACAATGAGGCA
AACAGATGGCCCTTCTGGGATTCACTAAAAGTCTGAAAGTGAATATGATT
GCTTTGGAACCGGCACAGTTCTACTAGTATCTCTGCCCGATTGGGAATGG
CTGTGGGTAGGGACCTTAAAGAANAAAAAAAATGGGGNTGCTGGTATGGG
GAGGTGGCCTGACTGCAGGCCAGCCTATGAACCTGGACAACGCTGGGACC
TAAATCTGACTGATTGTAATTCTATGAAAACAACGGGTTCTTACCCATGG
TACTTAGATGGCCCATCCACCTGAGGTGCTTGACATGCTCTAACAATGG
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