EY649704

Overview
NameEY649704
Unique NameEY649704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length949
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_SYNS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9311) GN=dxs PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.607e-23
Identity = 45/111 (40.54%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  382 LDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            L  + +P  +  LS  +L+ +A ++R   +  VS +GGHLG  LGV+ELT+AL+   +  +  ++WDVGHQ YPHK++TGR     ++RQ  G +G   ++ES +D FG G
Sbjct:    3 LSELTHPNQLHGLSETQLEAVAKQIRERHLEVVSNSGGHLGPGLGVVELTLALYQTLDLDRDKVVWDVGHQAYPHKLITGRYGSFDSLRQQGGVAGYLKRTESRFDHFGAG 113          

HSP 2 Score: 30.0314 bits (66), Expect = 8.607e-23
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRD 764
            H+STSISA LGMA+ RD
Sbjct:  114 HASTSISAALGMAIARD 130          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_STRGG (1-deoxy-D-xylulose-5-phosphate synthase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=dxs PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.195e-23
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            LL  I  P  +  LS+ EL QLA E+R  ++  VSKTGGHLG +LGV+ELT+ALH VF +P+  +LWD GHQ+Y HK+LTGR D    ++   G SG   ++ES++D
Sbjct:    3 LLTRIKGPRDLDRLSLGELDQLAQEIRTFLVDAVSKTGGHLGPNLGVVELTIALHRVFESPRDKVLWDTGHQSYVHKLLTGRQD-FSRLKSKGGLSGYPSRAESDHD 108          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_FRASN (1-deoxy-D-xylulose-5-phosphate synthase OS=Frankia sp. (strain EAN1pec) GN=dxs PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.195e-23
Identity = 54/107 (50.47%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            LL TI+ P  +K L   EL  LA E+R  +I  V++TGGHLG +LG +ELT+A+H VF++P   +LWD GHQ+Y HKILTGR ++   +RQ  G SG   ++ESE+D
Sbjct:    3 LLSTIDSPQDVKRLDHEELVTLAAEIRDFLIHAVARTGGHLGPNLGAVELTLAIHRVFDSPFDRVLWDTGHQSYVHKILTGRREQFDRLRQRGGLSGYPSQAESEHD 109          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_SYNSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9605) GN=dxs PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.120e-22
Identity = 45/111 (40.54%), Postives = 72/111 (64.86%), Query Frame = 1
Query:  382 LDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            L  + +P  +  LS  +L+ +A ++R   +  VS +GGHLG  LGV+ELT+AL+   +  +  ++WDVGHQ YPHK++TGR +   ++RQ  G +G   ++ES++D FG G
Sbjct:    3 LGDLKHPNELHGLSPAQLEDVARQIRERHLQVVSTSGGHLGPGLGVVELTLALYQTLDLDQDRVIWDVGHQAYPHKLITGRFNDFDSLRQQHGVAGYLKRTESDFDHFGAG 113          

HSP 2 Score: 29.261 bits (64), Expect = 1.120e-22
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRD 764
            H+STSISA LGMA+ RD
Sbjct:  114 HASTSISAALGMAMARD 130          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_CORGL (1-deoxy-D-xylulose-5-phosphate synthase OS=Corynebacterium glutamicum GN=dxs PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.201e-22
Identity = 51/107 (47.66%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L++I+ P  +K L+  +L  LA E+R  ++  V+ TGGHLG +LGV+ELT+ LH VF++P+ PI++D  HQ+Y HKILTGR     ++RQ DG SG   ++ESE+D
Sbjct:    3 ILNSISTPADLKALNDEDLDALAKEIRTFLVDKVAATGGHLGPNLGVVELTIGLHRVFDSPQDPIIFDTSHQSYVHKILTGRAKDFDSLRQKDGLSGYTCRAESEHD 109          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_CORGB (1-deoxy-D-xylulose-5-phosphate synthase OS=Corynebacterium glutamicum (strain R) GN=dxs PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.201e-22
Identity = 51/107 (47.66%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L++I+ P  +K L+  +L  LA E+R  ++  V+ TGGHLG +LGV+ELT+ LH VF++P+ PI++D  HQ+Y HKILTGR     ++RQ DG SG   ++ESE+D
Sbjct:    3 ILNSISTPADLKALNDEDLDALAKEIRTFLVDKVAATGGHLGPNLGVVELTIGLHRVFDSPQDPIIFDTSHQSYVHKILTGRAKDFDSLRQKDGLSGYTCRAESEHD 109          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_CHLFF (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydophila felis (strain Fe/C-56) GN=dxs PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.201e-22
Identity = 53/113 (46.90%), Postives = 78/113 (69.03%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGR-MDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            +L  I+ P  +KNLS+ EL  LA+++R  +I  ++ TGGHL S+LG+IE+T+ALHYVF++ +   ++DVGHQ YPHK+LTGR  ++   +R   G SG    SES +D F +G
Sbjct:    8 ILSRISSPTDLKNLSLAELSLLAEQMRHKIISVLTNTGGHLASNLGIIEVTIALHYVFSSTEDKFIFDVGHQAYPHKLLTGRNTEEFDRIRHDGGLSGFTSPSESMHDLFFSG 120          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS1_KITGR (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Kitasatospora griseola GN=dxs1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.201e-22
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 1
Query:  376 PLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            PLL  I  P  ++ L   +L  LA E+RA +I NV++TGGHLG +LGV+EL++ALH VF++P   ILWD GHQ Y HK+LTGR D    +R  DG SG   ++ES +D
Sbjct:    2 PLLSRITGPADLRRLHPEQLPPLAAEIRAFLIDNVTRTGGHLGPNLGVVELSIALHRVFDSPHDRILWDTGHQAYVHKLLTGRQD-FSRVRAKDGLSGYPSRAESPHD 108          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_MYCVP (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.568e-22
Identity = 53/107 (49.53%), Postives = 75/107 (70.09%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L+ I  P  +++LS  +L+ LA E+R  +I  V+ TGGHLG +LGV+ELT+ALH VF++P  PIL+D GHQ Y HK+LTGR     ++R+ DG SG    +ESE+D
Sbjct:    1 MLEQIRGPADLQHLSQAQLEDLAHEIRDFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPILFDTGHQAYVHKMLTGRCRDFDSLRKKDGLSGYPSSAESEHD 107          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RHOSR (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodococcus sp. (strain RHA1) GN=dxs PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.048e-22
Identity = 51/107 (47.66%), Postives = 75/107 (70.09%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYD 699
            +L  I  P  ++ L+  E+KQLA E+R  ++  V+ TGGHLG +LGV+ELT+ALH +F++P  PI++D GHQ Y HKILTGR D   ++R+  G SG   ++ES++D
Sbjct:    3 VLARIQTPDDLRQLNSAEMKQLAAEIREFLVQKVAATGGHLGPNLGVVELTLALHRIFDSPADPIIFDTGHQAYVHKILTGRKDDFDSLRKQGGLSGYPCRAESDHD 109          
The following BLAST results are available for this feature:
BLAST of EY649704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_SYNS38.607e-2340.541-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_STRGG9.195e-2350.471-deoxy-D-xylulose-5-phosphate synthase OS=Strepto... [more]
DXS_FRASN9.195e-2350.471-deoxy-D-xylulose-5-phosphate synthase OS=Frankia... [more]
DXS_SYNSC1.120e-2240.541-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_CORGL1.201e-2247.661-deoxy-D-xylulose-5-phosphate synthase OS=Coryneb... [more]
DXS_CORGB1.201e-2247.661-deoxy-D-xylulose-5-phosphate synthase OS=Coryneb... [more]
DXS_CHLFF1.201e-2246.901-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS1_KITGR1.201e-2250.931-deoxy-D-xylulose-5-phosphate synthase 1 OS=Kitas... [more]
DXS_MYCVP1.568e-2249.531-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_RHOSR2.048e-2247.661-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoco... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-F01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649704 ID=EY649704; Name=EY649704; organism=Citrus sinensis; type=EST; length=949bp
CCACGCGTCCGGCACTGAATACATTTACTGTGAGAAGATGACTGACCAGT
CGCGAGTGTTTTTAATTATATACTGATTTGCCGTCGTTAGCATATTATTC
TTCACTCACTGCGTGATGTTTTCTTTTCTGGGTTGTTCTATGCAATAGCT
GTTATGGCTCTCTCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAAC
AAATTCGGGTCCCCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAG
CAGCTCTTTTTTCCCATTTCTCACACAAGCTCGACAATCATCAGATACAG
CTCAAGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGA
GTATCACTCACAAAGACCACCAACACCTCTCTTGGACACCATAAACTATC
CAATTCACATGAAAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGAT
GAGTTGCGGGCCGATGTCATATTCAATGTTTCGAAAACCGGGGGTCACTT
GGGCTCAAGTCTTGGTGTGATTGAGCTTACCGTGGCCCTTCATTATGTTT
TCAATGCTCCCAAAGNACCGATACTGTGGGATGTCGGTCATCAGACTTAC
CCTCATAAAATCTTGACTGGGAGAATGGATAAGATGCATACAATGAGGCA
AACAGATGGCCCTTCTGGGATTCACTAAAAGTCTGAAAGTGAATATGATT
GCTTTGGAACCGGCACAGTTCTACTAGTATCTCTGCCCGATTGGGAATGG
CTGTGGGTAGGGACCTTAAAGAANAAAAAAAATGGGGNTGCTGGTATGGG
GAGGTGGCCTGACTGCAGGCCAGCCTATGAACCTGGACAACGCTGGGACC
TAAATCTGACTGATTGTAATTCTATGAAAACAACGGGTTCTTACCCATGG
TACTTAGATGGCCCATCCACCTGAGGTGCTTGACATGCTCTAACAATGG
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