EY649704 | Citrus Genome Database

Overview


Name	EY649704
Unique Name	EY649704
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	949

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_PSEU2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dxs PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.708e-36
Identity = 67/122 (54.92%), Postives = 88/122 (72.13%), Query Frame = 1

Query:  349 EYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            E   +RP TPLLD  + P  ++ L   EL+ LADELR +++++V +TGGH G+ LGVIELT+ALHYVF+ P   ++WDVGHQ YPHKILTGR  +M T+RQ +G +    +SESEYD FG G
Sbjct:    7 EIPRERPVTPLLDRADTPHGLRRLGEAELETLADELRLELLYSVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGHQAYPHKILTGRRARMSTLRQKEGVAAFPRRSESEYDTFGVG 128

HSP 2 Score: 27.7202 bits (60), Expect = 9.708e-36
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLK 770
            HSSTSISA LGMA+   L+
Sbjct:  129 HSSTSISAALGMAIASRLQ 147

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_PSEPW (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain W619) GN=dxs PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.708e-36
Identity = 66/122 (54.10%), Postives = 89/122 (72.95%), Query Frame = 1

Query:  349 EYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            E   +RP TPLLD  + P  ++ L+  +L+ LADELR ++++ V +TGGH G+ LGVIELT+ALHYVF+ P   ++WDVGHQ YPHKILTGR ++M ++RQ DG +    +SESEYD FG G
Sbjct:    7 EIPRERPVTPLLDRADTPAGLRRLAEADLEHLADELRQELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGHQAYPHKILTGRRNRMLSLRQKDGIAAFPRRSESEYDTFGVG 128

HSP 2 Score: 27.7202 bits (60), Expect = 9.708e-36
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLK 770
            HSSTSISA LGMA+   L+
Sbjct:  129 HSSTSISAALGMAIAARLQ 147

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BORA1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella avium (strain 197N) GN=dxs PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.710e-36
Identity = 71/113 (62.83%), Postives = 86/113 (76.11%), Query Frame = 1

Query:  373 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            T  LD I+ P  ++ L  R+LK +ADELRA V+ +VSKTGGHL S+LG +ELT+ALHYVF+ P   I+WDVGHQTYPHKILTGR D+M T+RQ  G SG   +SESEYD FGT
Sbjct:    3 TEHLDRIHSPADLRKLDRRDLKPIADELRAFVLESVSKTGGHLSSNLGTVELTLALHYVFDTPHDRIVWDVGHQTYPHKILTGRRDRMATLRQEGGISGFPKRSESEYDDFGT 115

HSP 2 Score: 27.335 bits (59), Expect = 9.710e-36
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 3

Query:  714 HSSTSISARLGMAV 755
            HSSTSISA LGMAV
Sbjct:  117 HSSTSISAALGMAV 130

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RHIME (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium meliloti GN=dxs PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.264e-35
Identity = 65/114 (57.02%), Postives = 88/114 (77.19%), Query Frame = 1

Query:  367 PPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            P TPLLD ++YP  +K +  R+L QLA ELRA+++  VS+TGGHLG+ LGV+ELT+A+H +F+ P   +++DVGHQ YPHKILTGR D++ T+RQ DG SG   ++ESEYD FG
Sbjct:   10 PATPLLDKVDYPDDLKKIDDRDLPQLAAELRAEMVDAVSRTGGHLGAGLGVVELTIAIHKIFDTPHDRLIFDVGHQCYPHKILTGRRDRIRTLRQEDGLSGFTRRAESEYDPFG 123

HSP 2 Score: 28.8758 bits (63), Expect = 1.264e-35
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMAV  +L
Sbjct:  126 HSSTSISAGLGMAVAAEL 143

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RHILW (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dxs PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.264e-35
Identity = 66/117 (56.41%), Postives = 88/117 (75.21%), Query Frame = 1

Query:  358 SQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            +Q P TPLLD + YP  ++ L  R+L QLA E+R ++I  VS+TGGHLG+ LGV+ELT+A+H VF+ P   +++DVGHQ YPHKILTGR D++ T+RQ DG SG   ++ESEYD FG
Sbjct:    2 TQLPKTPLLDQVTYPADLRKLEDRDLPQLAREVRDEMIDAVSRTGGHLGAGLGVVELTIAIHSVFDTPDDRLIFDVGHQCYPHKILTGRRDRIRTLRQEDGLSGFTRRAESEYDPFG 118

HSP 2 Score: 30.0314 bits (66), Expect = 1.264e-35
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+  DL
Sbjct:  121 HSSTSISAGLGMAIAADL 138

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_PSEPK (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain KT2440) GN=dxs PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.264e-35
Identity = 66/122 (54.10%), Postives = 89/122 (72.95%), Query Frame = 1

Query:  349 EYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            E   +RP TPLLD  + P  ++ L+  +L+ LADELR ++++ V +TGGH G+ LGVIELT+ALHYVF+ P   ++WDVGHQ YPHKILTGR ++M ++RQ DG +    +SESEYD FG G
Sbjct:    7 EIPRERPVTPLLDRADTPAGLRRLAEADLETLADELRQELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGHQAYPHKILTGRRNRMLSLRQKDGIAAFPRRSESEYDTFGVG 128

HSP 2 Score: 27.7202 bits (60), Expect = 1.264e-35
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLK 770
            HSSTSISA LGMA+   L+
Sbjct:  129 HSSTSISAALGMAIAARLQ 147

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_PSEPG (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain GB-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.264e-35
Identity = 66/122 (54.10%), Postives = 89/122 (72.95%), Query Frame = 1

Query:  349 EYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            E   +RP TPLLD  + P  ++ L+  +L+ LADELR ++++ V +TGGH G+ LGVIELT+ALHYVF+ P   ++WDVGHQ YPHKILTGR ++M ++RQ DG +    +SESEYD FG G
Sbjct:    7 EIPRERPVTPLLDRADTPAGLRRLAEADLETLADELRQELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGHQAYPHKILTGRRNRMLSLRQKDGIAAFPRRSESEYDTFGVG 128

HSP 2 Score: 27.7202 bits (60), Expect = 1.264e-35
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLK 770
            HSSTSISA LGMA+   L+
Sbjct:  129 HSSTSISAALGMAIAARLQ 147

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_PSEP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dxs PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.264e-35
Identity = 66/122 (54.10%), Postives = 89/122 (72.95%), Query Frame = 1

Query:  349 EYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            E   +RP TPLLD  + P  ++ L+  +L+ LADELR ++++ V +TGGH G+ LGVIELT+ALHYVF+ P   ++WDVGHQ YPHKILTGR ++M ++RQ DG +    +SESEYD FG G
Sbjct:    7 EIPRERPVTPLLDRADTPAGLRRLAEADLETLADELRQELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWDVGHQAYPHKILTGRRNRMLSLRQKDGIAAFPRRSESEYDTFGVG 128

HSP 2 Score: 27.7202 bits (60), Expect = 1.264e-35
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLK 770
            HSSTSISA LGMA+   L+
Sbjct:  129 HSSTSISAALGMAIAARLQ 147

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_NITWN (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dxs PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.646e-35
Identity = 61/112 (54.46%), Postives = 83/112 (74.11%), Query Frame = 1

Query:  373 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            TPLLDTI  P  ++ L + +++Q+ADELR + I  VS TGGH G+ LGV+ELT A+HY+F+ P+  ++WDVGHQ YPHKILTGR D++ T+R   G SG   ++ES+YD FG
Sbjct:   31 TPLLDTIRTPADLRKLKVEQVRQVADELRLETIDAVSVTGGHFGAGLGVVELTTAIHYIFDTPRDRLIWDVGHQAYPHKILTGRRDRIRTLRTGGGLSGFTKRTESDYDPFG 142

HSP 2 Score: 33.113 bits (74), Expect = 1.646e-35
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMAV RDL
Sbjct:  145 HSSTSISASLGMAVARDL 162

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RHOPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=dxs PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.647e-35
Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 1

Query:  358 SQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            S+   TPLLDTI  P  ++ L I +++Q+ADELR + I  VS TGGH G+ LGV+ELT A+HYVF+ P+  ++WDVGHQ YPHKILTGR D++ T+R   G SG   ++ES+YD FG
Sbjct:    2 SEFSKTPLLDTIRTPADLRKLRIDQVRQVADELRQETIEAVSVTGGHFGAGLGVVELTTAIHYVFDTPRDRLIWDVGHQAYPHKILTGRRDRIRTLRTGGGLSGFTKRTESDYDPFG 118

HSP 2 Score: 33.113 bits (74), Expect = 1.647e-35
Identity = 17/22 (77.27%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLKEXK 779
            HSSTSISA LGMAV RDL   K
Sbjct:  121 HSSTSISAGLGMAVARDLAGGK 142

The following BLAST results are available for this feature:

BLAST of EY649704 vs. ExPASy Swiss-Prot

BLAST of EY649704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
DXS_PSEU2	9.708e-36	54.92	1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom...	[more]
DXS_PSEPW	9.708e-36	54.10	1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom...	[more]
DXS_BORA1	9.710e-36	62.83	1-deoxy-D-xylulose-5-phosphate synthase OS=Bordete...	[more]
DXS_RHIME	1.264e-35	57.02	1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi...	[more]
DXS_RHILW	1.264e-35	56.41	1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi...	[more]
DXS_PSEPK	1.264e-35	54.10	1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom...	[more]
DXS_PSEPG	1.264e-35	54.10	1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom...	[more]
DXS_PSEP1	1.264e-35	54.10	1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom...	[more]
DXS_NITWN	1.646e-35	54.46	1-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba...	[more]
DXS_RHOPB	1.647e-35	54.70	1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-100-002-F01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY649704 ID=EY649704; Name=EY649704; organism=Citrus sinensis; type=EST; length=949bp
CCACGCGTCCGGCACTGAATACATTTACTGTGAGAAGATGACTGACCAGT
CGCGAGTGTTTTTAATTATATACTGATTTGCCGTCGTTAGCATATTATTC
TTCACTCACTGCGTGATGTTTTCTTTTCTGGGTTGTTCTATGCAATAGCT
GTTATGGCTCTCTCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAAC
AAATTCGGGTCCCCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAG
CAGCTCTTTTTTCCCATTTCTCACACAAGCTCGACAATCATCAGATACAG
CTCAAGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGA
GTATCACTCACAAAGACCACCAACACCTCTCTTGGACACCATAAACTATC
CAATTCACATGAAAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGAT
GAGTTGCGGGCCGATGTCATATTCAATGTTTCGAAAACCGGGGGTCACTT
GGGCTCAAGTCTTGGTGTGATTGAGCTTACCGTGGCCCTTCATTATGTTT
TCAATGCTCCCAAAGNACCGATACTGTGGGATGTCGGTCATCAGACTTAC
CCTCATAAAATCTTGACTGGGAGAATGGATAAGATGCATACAATGAGGCA
AACAGATGGCCCTTCTGGGATTCACTAAAAGTCTGAAAGTGAATATGATT
GCTTTGGAACCGGCACAGTTCTACTAGTATCTCTGCCCGATTGGGAATGG
CTGTGGGTAGGGACCTTAAAGAANAAAAAAAATGGGGNTGCTGGTATGGG
GAGGTGGCCTGACTGCAGGCCAGCCTATGAACCTGGACAACGCTGGGACC
TAAATCTGACTGATTGTAATTCTATGAAAACAACGGGTTCTTACCCATGG
TACTTAGATGGCCCATCCACCTGAGGTGCTTGACATGCTCTAACAATGG