EY649704 | Citrus Genome Database

Overview


Name	EY649704
Unique Name	EY649704
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	949

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BRASO (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain ORS278) GN=dxs PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.647e-35
Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = 1

Query:  373 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            TPLLDTI  P  ++ L + +++Q+ADELR + I  VS TGGH G+ LGV+ELT A+HYVF+ P+  ++WDVGHQ YPHKILTGR D++ T+R   G SG   ++ES+YD FG
Sbjct:    7 TPLLDTIKTPEDLRRLKVEQVRQVADELRQETIDAVSVTGGHFGAGLGVVELTTAIHYVFDTPRDRLIWDVGHQAYPHKILTGRRDRIRTLRTGGGLSGFTKRAESDYDPFG 118

HSP 2 Score: 33.4982 bits (75), Expect = 1.647e-35
Identity = 17/22 (77.27%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLKEXK 779
            HSSTSISA LGMAV RDL   K
Sbjct:  121 HSSTSISAGLGMAVARDLSGGK 142

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BRASB (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=dxs PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.647e-35
Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = 1

Query:  373 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            TPLLDTI  P  ++ L + +++Q+ADELR + I  VS TGGH G+ LGV+ELT A+HYVF+ P+  ++WDVGHQ YPHKILTGR D++ T+R   G SG   ++ES+YD FG
Sbjct:    7 TPLLDTIKTPEDLRRLKVEQVRQVADELRQETIDAVSVTGGHFGAGLGVVELTTAIHYVFDTPRDRLIWDVGHQAYPHKILTGRRDRIRTLRTGGGLSGFTKRTESDYDPFG 118

HSP 2 Score: 33.4982 bits (75), Expect = 1.647e-35
Identity = 17/22 (77.27%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLKEXK 779
            HSSTSISA LGMAV RDL   K
Sbjct:  121 HSSTSISAGLGMAVARDLSGGK 142

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_CUPTR (1-deoxy-D-xylulose-5-phosphate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dxs PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.647e-35
Identity = 68/111 (61.26%), Postives = 86/111 (77.48%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL+ I+ P  ++ L  REL+ LADELRA V+ +VS+TGGHL S+LG +ELT+ALHYVFN P   ++WDVGHQ+YPHKILTGR ++M T+RQ  G SG   +SESEYD FGT
Sbjct:    5 LLNKIDAPADLRKLDRRELQTLADELRAYVLESVSQTGGHLSSNLGTVELTIALHYVFNTPDDRLVWDVGHQSYPHKILTGRRERMRTLRQWGGISGFPRRSESEYDTFGT 115

HSP 2 Score: 28.4906 bits (62), Expect = 1.647e-35
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVG 758
            HSSTSISA LGMA+G
Sbjct:  117 HSSTSISAALGMALG 131

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RALSO (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia solanacearum GN=dxs PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.145e-35
Identity = 68/111 (61.26%), Postives = 86/111 (77.48%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL+TI+ P  ++ L  R+L  LADELRA V+ +V++TGGHL S+LG +ELT+ALHYVFN P   I+WDVGHQ+YPHKILTGR ++M T+RQ DG SG   +SES YD FGT
Sbjct:    5 LLNTIDAPAELRRLDRRQLGTLADELRAFVLESVAQTGGHLSSNLGTVELTIALHYVFNTPDDRIVWDVGHQSYPHKILTGRREQMATLRQLDGISGFPRRSESPYDTFGT 115

HSP 2 Score: 28.4906 bits (62), Expect = 2.145e-35
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVG 758
            HSSTSISA LGMA+G
Sbjct:  117 HSSTSISAALGMALG 131

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RALEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=dxs PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.145e-35
Identity = 68/111 (61.26%), Postives = 86/111 (77.48%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL+ I+ P  ++ L  REL+ LADELRA V+ +VS+TGGHL S+LG +ELT+ALHYVFN P   ++WDVGHQ+YPHKILTGR ++M T+RQ  G SG   +SESEYD FGT
Sbjct:    5 LLNKIDAPADLRKLDRRELRTLADELRAYVLESVSQTGGHLSSNLGTVELTIALHYVFNTPDDRLVWDVGHQSYPHKILTGRRERMGTLRQWGGISGFPRRSESEYDTFGT 115

HSP 2 Score: 28.4906 bits (62), Expect = 2.145e-35
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVG 758
            HSSTSISA LGMA+G
Sbjct:  117 HSSTSISAALGMALG 131

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RALPJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia pickettii (strain 12J) GN=dxs PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.145e-35
Identity = 68/111 (61.26%), Postives = 87/111 (78.38%), Query Frame = 1

Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL+TI+ P  ++ L  R+L  LA+ELRA V+ +VS+TGGHL S+LG +ELT+ALHYVFN P+  I+WDVGHQ+YPHKILTGR D+M ++RQ DG SG   +SES YD FGT
Sbjct:    5 LLNTIDDPADLRRLDRRQLGPLANELRAFVLDSVSQTGGHLSSNLGTVELTIALHYVFNTPEDRIVWDVGHQSYPHKILTGRRDQMGSLRQLDGISGFPRRSESPYDTFGT 115

HSP 2 Score: 29.261 bits (64), Expect = 2.145e-35
Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLK 770
            HSSTSISA LGMA+G   K
Sbjct:  117 HSSTSISAALGMALGAKTK 135

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_ACIAC (1-deoxy-D-xylulose-5-phosphate synthase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.146e-35
Identity = 69/112 (61.61%), Postives = 87/112 (77.68%), Query Frame = 1

Query:  376 PLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            PLL T+N P  ++ +S  +LK+LA ELRA V+ +VSKTGGHL S+LG +ELTVALH VF+ P+  ++WDVGHQTYPHKILTGR D+M T+RQ  G SG   ++ESEYD FGT
Sbjct:    7 PLLQTVNDPADLRRMSRAQLKELAAELRAFVLDSVSKTGGHLSSNLGTVELTVALHTVFDTPRDRLVWDVGHQTYPHKILTGRRDRMPTLRQLGGLSGFPQRTESEYDTFGT 118

HSP 2 Score: 26.1794 bits (56), Expect = 2.146e-35
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 3

Query:  714 HSSTSISARLGMAV 755
            HSSTSISA LGMA+
Sbjct:  120 HSSTSISAALGMAM 133

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RHIL3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxs PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.794e-35
Identity = 66/117 (56.41%), Postives = 88/117 (75.21%), Query Frame = 1

Query:  358 SQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            +Q P TPLLD + YP  ++ L  R+L QLA E+R ++I  VS+TGGHLG+ LGV+ELT+A+H VF+ P   +++DVGHQ YPHKILTGR D++ T+RQ DG SG   ++ESEYD FG
Sbjct:    2 TQLPKTPLLDQVIYPADLRKLEDRDLPQLAREVRDEMIDAVSRTGGHLGAGLGVVELTIAIHSVFDTPDDRLIFDVGHQCYPHKILTGRRDRIRTLRQEDGLSGFTRRAESEYDPFG 118

HSP 2 Score: 30.0314 bits (66), Expect = 2.794e-35
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA+  DL
Sbjct:  121 HSSTSISAGLGMAIAADL 138

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_SILST (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter sp. (strain TM1040) GN=dxs PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.639e-35
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 1

Query:  358 SQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            + RP TPLLD I  P  +K LS  +L+Q+A ELR + I  VS TGGHLG+ LGV+ELTVALH VF+ PK  ++WDV HQ YPHKILTGR D++ T+R  DG SG   +SES +D FG
Sbjct:    2 TDRPQTPLLDQIASPADLKRLSDAQLEQVAHELRQETISAVSVTGGHLGAGLGVVELTVALHSVFDTPKDKVIWDVSHQCYPHKILTGRRDRIRTLRMKDGLSGFTKRSESAFDPFG 118

HSP 2 Score: 30.0314 bits (66), Expect = 3.639e-35
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LG +V RDL
Sbjct:  121 HSSTSISAALGFSVARDL 138

[Close]

BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_XANP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dxs PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.639e-35
Identity = 68/112 (60.71%), Postives = 82/112 (73.21%), Query Frame = 1

Query:  373 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            TPLLDTI     ++ L   +L QLA ELRA+ I  VS TGGHLG+ LGV+ELTVALH+VFN P   ++WDVGHQ YPHKILTGR D++ T+RQ  G SG   ++ESEYD FG
Sbjct:    6 TPLLDTIRDAADVRRLPQDKLAQLAAELRAETIDAVSVTGGHLGAGLGVVELTVALHHVFNTPHDRLIWDVGHQCYPHKILTGRRDRIRTLRQGGGLSGFTRRAESEYDPFG 117

HSP 2 Score: 33.4982 bits (75), Expect = 3.639e-35
Identity = 20/33 (60.61%), Postives = 22/33 (66.67%), Query Frame = 3

Query:  714 HSSTSISARLGMAVGRDLK-EXKKWGCWYGEVA 809
            HSSTSISA LGMAV RDL  E +   C  G+ A
Sbjct:  120 HSSTSISAGLGMAVARDLSGEERNVVCVIGDGA 152

The following BLAST results are available for this feature:

BLAST of EY649704 vs. ExPASy Swiss-Prot

BLAST of EY649704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
DXS_BRASO	1.647e-35	55.36	1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh...	[more]
DXS_BRASB	1.647e-35	55.36	1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh...	[more]
DXS_CUPTR	1.647e-35	61.26	1-deoxy-D-xylulose-5-phosphate synthase OS=Cupriav...	[more]
DXS_RALSO	2.145e-35	61.26	1-deoxy-D-xylulose-5-phosphate synthase OS=Ralston...	[more]
DXS_RALEH	2.145e-35	61.26	1-deoxy-D-xylulose-5-phosphate synthase OS=Ralston...	[more]
DXS_RALPJ	2.145e-35	61.26	1-deoxy-D-xylulose-5-phosphate synthase OS=Ralston...	[more]
DXS_ACIAC	2.146e-35	61.61	1-deoxy-D-xylulose-5-phosphate synthase OS=Acidovo...	[more]
DXS_RHIL3	2.794e-35	56.41	1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi...	[more]
DXS_SILST	3.639e-35	58.12	1-deoxy-D-xylulose-5-phosphate synthase OS=Silicib...	[more]
DXS_XANP2	3.639e-35	60.71	1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthob...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-100-002-F01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY649704 ID=EY649704; Name=EY649704; organism=Citrus sinensis; type=EST; length=949bp
CCACGCGTCCGGCACTGAATACATTTACTGTGAGAAGATGACTGACCAGT
CGCGAGTGTTTTTAATTATATACTGATTTGCCGTCGTTAGCATATTATTC
TTCACTCACTGCGTGATGTTTTCTTTTCTGGGTTGTTCTATGCAATAGCT
GTTATGGCTCTCTCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAAC
AAATTCGGGTCCCCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAG
CAGCTCTTTTTTCCCATTTCTCACACAAGCTCGACAATCATCAGATACAG
CTCAAGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGA
GTATCACTCACAAAGACCACCAACACCTCTCTTGGACACCATAAACTATC
CAATTCACATGAAAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGAT
GAGTTGCGGGCCGATGTCATATTCAATGTTTCGAAAACCGGGGGTCACTT
GGGCTCAAGTCTTGGTGTGATTGAGCTTACCGTGGCCCTTCATTATGTTT
TCAATGCTCCCAAAGNACCGATACTGTGGGATGTCGGTCATCAGACTTAC
CCTCATAAAATCTTGACTGGGAGAATGGATAAGATGCATACAATGAGGCA
AACAGATGGCCCTTCTGGGATTCACTAAAAGTCTGAAAGTGAATATGATT
GCTTTGGAACCGGCACAGTTCTACTAGTATCTCTGCCCGATTGGGAATGG
CTGTGGGTAGGGACCTTAAAGAANAAAAAAAATGGGGNTGCTGGTATGGG
GAGGTGGCCTGACTGCAGGCCAGCCTATGAACCTGGACAACGCTGGGACC
TAAATCTGACTGATTGTAATTCTATGAAAACAACGGGTTCTTACCCATGG
TACTTAGATGGCCCATCCACCTGAGGTGCTTGACATGCTCTAACAATGG