EY649704

Overview
NameEY649704
Unique NameEY649704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length949
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RHOP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=dxs PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 3.639e-35
Identity = 63/112 (56.25%), Postives = 83/112 (74.11%), Query Frame = 1
Query:  373 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            TPLLDTI  P  ++ L I +++Q+ADELR + I  VS TGGH G+ LGV+ELT A+HYVF+ P+  ++WDVGHQ YPHKILTGR D++ T+R   G SG   ++ES+YD FG
Sbjct:    4 TPLLDTIRTPDDLRKLRIDQVQQVADELRQETIDAVSVTGGHFGAGLGVVELTTAIHYVFDTPRDRLIWDVGHQAYPHKILTGRRDRIRTLRTAGGLSGFTKRTESDYDPFG 115          

HSP 2 Score: 32.7278 bits (73), Expect = 3.639e-35
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMAV RDL
Sbjct:  118 HSSTSISAGLGMAVARDL 135          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_PSEU5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas stutzeri (strain A1501) GN=dxs PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 3.640e-35
Identity = 63/117 (53.85%), Postives = 86/117 (73.50%), Query Frame = 1
Query:  364 RPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            RP TP+LD    P  ++ L   EL++LA+ELR +++++V +TGGH G+ LGVIELT+ALHYV++ P   ++WDVGHQ YPHKILTGR ++M T+RQ DG +    + ESEYD FG G
Sbjct:   12 RPATPVLDRAATPEQLRRLGEAELEELANELRQELLYSVGRTGGHFGAGLGVIELTIALHYVYDTPDDRLVWDVGHQAYPHKILTGRRERMGTLRQKDGLAAFPRRVESEYDTFGVG 128          

HSP 2 Score: 29.6462 bits (65), Expect = 3.640e-35
Identity = 15/19 (78.95%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLK 770
            HSSTSISA LGMAV   LK
Sbjct:  129 HSSTSISAALGMAVAARLK 147          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RHOPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=dxs PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.740e-35
Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = 1
Query:  373 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            TPLLDTI  P  ++ L + +++Q+ADELR + I  VS TGGH G+ LGV+ELT A+HYVF+ P+  ++WDVGHQ YPHKILTGR D++ T+R   G SG   ++ES+YD FG
Sbjct:    4 TPLLDTIRTPEDLRKLRVDQVQQVADELRQETIDAVSVTGGHFGAGLGVVELTTAIHYVFDTPRDRLIWDVGHQAYPHKILTGRRDRIRTLRTAGGLSGFTKRTESDYDPFG 115          

HSP 2 Score: 32.7278 bits (73), Expect = 4.740e-35
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMAV RDL
Sbjct:  118 HSSTSISAGLGMAVARDL 135          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RHOCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodobacter capsulatus GN=dxs PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.174e-35
Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = 1
Query:  373 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            TP LD +  P  +K +SI +L  LA E+R +++  VS+TGGHLGSSLGV+ELTVALH VFN+P   ++WDVGHQ YPHKILTGR  +M T+RQ  G SG   +SES +D FG G
Sbjct:    8 TPHLDRVTGPADLKAMSIADLTALASEVRREIVEVVSQTGGHLGSSLGVVELTVALHAVFNSPGDKLIWDVGHQCYPHKILTGRRSRMLTLRQAGGISGFPKRSESPHDAFGAG 121          

HSP 2 Score: 31.9574 bits (71), Expect = 6.174e-35
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LG AVGR+L
Sbjct:  122 HSSTSISAALGFAVGREL 139          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RHIEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxs PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.174e-35
Identity = 64/114 (56.14%), Postives = 86/114 (75.44%), Query Frame = 1
Query:  367 PPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            P TPLLD + YP  ++ L  R+L QLA E+R ++I  VS+TGGHLG+ LGV+ELT+A+H VF+ P   +++DVGHQ YPHKILTGR D++ T+RQ +G SG   ++ESEYD FG
Sbjct:    5 PKTPLLDQVTYPADLRKLEDRDLPQLAREVRDEMIDAVSRTGGHLGAGLGVVELTIAIHSVFDTPNDRLIFDVGHQCYPHKILTGRRDRIRTLRQENGLSGFTRRAESEYDPFG 118          

HSP 2 Score: 30.8018 bits (68), Expect = 6.174e-35
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLKE 773
            HSSTSISA LGMA+  DL++
Sbjct:  121 HSSTSISAGLGMAIAADLEK 140          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_HAHCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Hahella chejuensis (strain KCTC 2396) GN=dxs PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.041e-35
Identity = 66/117 (56.41%), Postives = 86/117 (73.50%), Query Frame = 1
Query:  364 RPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGTG 714
            RP TPLLD I+ P  ++ L+  EL QLA ELRA ++++V ++GGH G+ LGV+ELTVALHY FN P+  ++WDVGHQ YPHKILTGR ++M T+RQ DG +    + ES YD FG G
Sbjct:   14 RPNTPLLDKIDSPAQLRLLNEAELLQLAHELRAFLLYSVGQSGGHFGAGLGVVELTVALHYAFNTPEDRLVWDVGHQAYPHKILTGRREQMLTIRQKDGLAAFPRREESPYDTFGVG 130          

HSP 2 Score: 27.7202 bits (60), Expect = 8.041e-35
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLK 770
            HSSTSISA LGMA+   L+
Sbjct:  131 HSSTSISAALGMAIAARLQ 149          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_PHEZH (1-deoxy-D-xylulose-5-phosphate synthase OS=Phenylobacterium zucineum (strain HLK1) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.047e-34
Identity = 69/114 (60.53%), Postives = 89/114 (78.07%), Query Frame = 1
Query:  367 PPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFG 708
            P TPLLDT++ P   + LSI +L+QLADE+RA+ I  VS+TGGHLG+ LGV+ELTVALH+V+  PK  ++WDVGHQ YPHKILTGR D++ T+RQ  G SG   ++ES+YD FG
Sbjct:    3 PVTPLLDTVSSPADTRGLSIAQLRQLADEVRAETIDAVSQTGGHLGAGLGVVELTVALHHVYETPKDILIWDVGHQAYPHKILTGRRDRIRTLRQGGGLSGFTKRAESDYDPFG 116          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_BEII9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dxs PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.047e-34
Identity = 69/113 (61.06%), Postives = 83/113 (73.45%), Query Frame = 1
Query:  373 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            TPLLDTI  P  ++ L   +L QLADELR + I  VS TGGHLG+ LGV+ELTVALHYVF+ P   ++WDVGHQ YPHKILTGR D++ T+R+  G SG   +SES YD FGT
Sbjct:    7 TPLLDTIATPTDLRRLKESDLAQLADELRTETIDAVSVTGGHLGAGLGVVELTVALHYVFDTPHDRLIWDVGHQAYPHKILTGRRDRIRTLRRAGGLSGFTKRSESVYDPFGT 119          

HSP 2 Score: 26.1794 bits (56), Expect = 1.047e-34
Identity = 13/18 (72.22%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDL 767
            HSSTSISA LGMA    L
Sbjct:  121 HSSTSISAGLGMAAATTL 138          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RALEJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=dxs PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.048e-34
Identity = 66/111 (59.46%), Postives = 86/111 (77.48%), Query Frame = 1
Query:  379 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            LL  I+ P  ++ L  REL+ LADELRA V+ +VS+TGGHL S+LG +ELT+ALHYVF+ P   ++WDVGHQ+YPHKILTGR ++M+T+RQ  G SG   +SES+YD FGT
Sbjct:    5 LLKKIDAPADLRKLDRRELRTLADELRAYVLESVSQTGGHLSSNLGTVELTIALHYVFHTPDDRVVWDVGHQSYPHKILTGRRERMNTLRQFGGISGFPRRSESQYDTFGT 115          

HSP 2 Score: 28.4906 bits (62), Expect = 1.048e-34
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  714 HSSTSISARLGMAVG 758
            HSSTSISA LGMA+G
Sbjct:  117 HSSTSISAALGMALG 131          
BLAST of EY649704 vs. ExPASy Swiss-Prot
Match: DXS_RHOFD (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=dxs PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.048e-34
Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = 1
Query:  376 PLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKXPILWDVGHQTYPHKILTGRMDKMHTMRQTDGPSGIH*KSESEYDCFGT 711
            PLL TIN P  ++ +   +L  LADELRA ++ +V+KTGGHL S+LG +ELTVALHYVFN P   ++WDVGHQTYPHKILTGR ++M T+RQ  G SG   + ESEYD FGT
Sbjct:    7 PLLHTINDPADLRLVPRAQLGALADELRAYLLHSVAKTGGHLSSNLGTVELTVALHYVFNTPHDRVVWDVGHQTYPHKILTGRRERMATLRQLGGLSGFPQRGESEYDDFGT 118          

HSP 2 Score: 27.7202 bits (60), Expect = 1.048e-34
Identity = 12/24 (50.00%), Postives = 18/24 (75.00%), Query Frame = 3
Query:  714 HSSTSISARLGMAVGRDLKEXKKW 785
            HSSTSISA LGMA+   ++  +++
Sbjct:  120 HSSTSISAALGMALAAKIRGEERY 143          
The following BLAST results are available for this feature:
BLAST of EY649704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_RHOP23.639e-3556.251-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_PSEU53.640e-3553.851-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_RHOPS4.740e-3555.361-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOCA6.174e-3557.891-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoba... [more]
DXS_RHIEC6.174e-3556.141-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_HAHCH8.041e-3556.411-deoxy-D-xylulose-5-phosphate synthase OS=Hahella... [more]
DXS_PHEZH1.047e-3460.531-deoxy-D-xylulose-5-phosphate synthase OS=Phenylo... [more]
DXS_BEII91.047e-3461.061-deoxy-D-xylulose-5-phosphate synthase OS=Beijeri... [more]
DXS_RALEJ1.048e-3459.461-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_RHOFD1.048e-3460.711-deoxy-D-xylulose-5-phosphate synthase OS=Rhodofe... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-F01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649704 ID=EY649704; Name=EY649704; organism=Citrus sinensis; type=EST; length=949bp
CCACGCGTCCGGCACTGAATACATTTACTGTGAGAAGATGACTGACCAGT
CGCGAGTGTTTTTAATTATATACTGATTTGCCGTCGTTAGCATATTATTC
TTCACTCACTGCGTGATGTTTTCTTTTCTGGGTTGTTCTATGCAATAGCT
GTTATGGCTCTCTCCGCATTCTCATTCCCGACTTATGTCAGCAAAGCAAC
AAATTCGGGTCCCCACAAATCTTCTCCTGTTACTTCTCATTTCTTTGGAG
CAGCTCTTTTTTCCCATTTCTCACACAAGCTCGACAATCATCAGATACAG
CTCAAGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCAGAAAGAGGAGA
GTATCACTCACAAAGACCACCAACACCTCTCTTGGACACCATAAACTATC
CAATTCACATGAAAAATCTATCCATCAGGGAGCTGAAACAACTGGCAGAT
GAGTTGCGGGCCGATGTCATATTCAATGTTTCGAAAACCGGGGGTCACTT
GGGCTCAAGTCTTGGTGTGATTGAGCTTACCGTGGCCCTTCATTATGTTT
TCAATGCTCCCAAAGNACCGATACTGTGGGATGTCGGTCATCAGACTTAC
CCTCATAAAATCTTGACTGGGAGAATGGATAAGATGCATACAATGAGGCA
AACAGATGGCCCTTCTGGGATTCACTAAAAGTCTGAAAGTGAATATGATT
GCTTTGGAACCGGCACAGTTCTACTAGTATCTCTGCCCGATTGGGAATGG
CTGTGGGTAGGGACCTTAAAGAANAAAAAAAATGGGGNTGCTGGTATGGG
GAGGTGGCCTGACTGCAGGCCAGCCTATGAACCTGGACAACGCTGGGACC
TAAATCTGACTGATTGTAATTCTATGAAAACAACGGGTTCTTACCCATGG
TACTTAGATGGCCCATCCACCTGAGGTGCTTGACATGCTCTAACAATGG
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