EY649692

Overview
NameEY649692
Unique NameEY649692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649692 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 7.561e-34
Identity = 78/141 (55.32%), Postives = 102/141 (72.34%), Query Frame = 3
Query:  183 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLXQAEKLLGTGIHPIRIAEGYEMASXIAVEHLXRIAXKVEFRLNDLEPLVQTCMTTLNSK 605
            +N+SA KAVA  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  A+++VELS++QD E GDGTT VV++AGSLL    KLL  GIHP  I+E ++ A    +E L  ++  V+  L+D E L+ +  T+LNSK
Sbjct:   36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQ--LSDRETLLNSATTSLNSK 174          
BLAST of EY649692 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 9.875e-34
Identity = 78/141 (55.32%), Postives = 101/141 (71.63%), Query Frame = 3
Query:  183 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLXQAEKLLGTGIHPIRIAEGYEMASXIAVEHLXRIAXKVEFRLNDLEPLVQTCMTTLNSK 605
            +N+SA KAVA  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  A+++VELS++QD E GDGTT VV++AGSLL    KLL  GIHP  I+E ++ A    +E L  ++   E  L+D E L+ +  T+LNSK
Sbjct:   39 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPEE--LSDRETLLNSAATSLNSK 177          
BLAST of EY649692 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.290e-33
Identity = 77/164 (46.95%), Postives = 109/164 (66.46%), Query Frame = 3
Query:  114 GRPFILLRQQEKKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLXQAEKLLGTGIHPIRIAEGYEMASXIAVEHLXRIAXKVEFRLNDLEPLVQTCMTTLNSK 605
            G P ++L+  E   R  G DAQ+ N+ A + +A  ++++LGPKGMDKML    GDV ITNDG TIL++MDV++  AK+++E++++QD E+GDGTT  VV+AG LL +AE+LL   IHP  IA GY MA+  AVE L  IA  ++  + D E L +   T +  K
Sbjct:    6 GTPVLILK--EGTQRTVGRDAQRMNIMAARVIAEAVKSTLGPKGMDKMLVDSLGDVVITNDGVTILKEMDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKKAEELLDQDIHPTVIARGYRMAANKAVEILESIAMDID--VEDEETLKKIAATAITGK 165          
BLAST of EY649692 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.684e-33
Identity = 78/164 (47.56%), Postives = 110/164 (67.07%), Query Frame = 3
Query:  114 GRPFILLRQQEKKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLXQAEKLLGTGIHPIRIAEGYEMASXIAVEHLXRIAXKVEFRLNDLEPLVQTCMTTLNSK 605
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL   IHP  + +GY +A+  A E L  IA +V  + +D E L++  MT +  K
Sbjct:    6 GQPILIL--PEGTQRYVGRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIVIKGYMLAAEKAQEILDSIAKEV--KPDDEEVLLKAAMTAITGK 165          
BLAST of EY649692 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.684e-33
Identity = 79/164 (48.17%), Postives = 110/164 (67.07%), Query Frame = 3
Query:  114 GRPFILLRQQEKKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLXQAEKLLGTGIHPIRIAEGYEMASXIAVEHLXRIAXKVEFRLNDLEPLVQTCMTTLNSK 605
            G+P ++L   E   R  G DAQ+ N+ A + VA  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL   IHP  I +GY +A+  A E L  IA +V    +D+E L +  +T++  K
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIVAETIRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYALAAEKAQEILEGIAKEVS--PDDVETLKKAAVTSITGK 165          
BLAST of EY649692 vs. ExPASy Swiss-Prot
Match: THSB_THEK8 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-8) GN=thsB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.684e-33
Identity = 79/164 (48.17%), Postives = 108/164 (65.85%), Query Frame = 3
Query:  114 GRPFILLRQQEKKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLXQAEKLLGTGIHPIRIAEGYEMASXIAVEHLXRIAXKVEFRLNDLEPLVQTCMTTLNSK 605
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL   IHP  I +GY +A+  A E L  IA  V+  + D E L +  MT +  K
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDSIARDVD--VEDREILKKAAMTAITGK 165          
BLAST of EY649692 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.873e-33
Identity = 78/164 (47.56%), Postives = 109/164 (66.46%), Query Frame = 3
Query:  114 GRPFILLRQQEKKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLXQAEKLLGTGIHPIRIAEGYEMASXIAVEHLXRIAXKVEFRLNDLEPLVQTCMTTLNSK 605
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL   IHP  I +GY +A+  A E L  IA  V+  + D E L +  +T++  K
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAKDVD--VEDREILKKAAVTSITGK 165          
BLAST of EY649692 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.873e-33
Identity = 78/164 (47.56%), Postives = 109/164 (66.46%), Query Frame = 3
Query:  114 GRPFILLRQQEKKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLXQAEKLLGTGIHPIRIAEGYEMASXIAVEHLXRIAXKVEFRLNDLEPLVQTCMTTLNSK 605
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL   IHP  I +GY +A+  A E L  IA  V+  + D E L +  +T++  K
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAKDVD--VEDREILKKAAVTSITGK 165          
BLAST of EY649692 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.873e-33
Identity = 78/164 (47.56%), Postives = 110/164 (67.07%), Query Frame = 3
Query:  114 GRPFILLRQQEKKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLXQAEKLLGTGIHPIRIAEGYEMASXIAVEHLXRIAXKVEFRLNDLEPLVQTCMTTLNSK 605
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ +TNDGATIL+++D+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL   IHP  I +GY +A+  A E L  IA KV    +D E L++  MT++  K
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILEEIAIKV--NPDDEETLLRIAMTSITGK 165          
BLAST of EY649692 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.873e-33
Identity = 82/167 (49.10%), Postives = 112/167 (67.07%), Query Frame = 3
Query:  135 RQQEKKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLXQAEKLLGTGIHPIRIAEGYEMASXIAVEHLXRIAXKVEFRLNDLEPLVQTCMTTLNSK-----WWILA 620
            R++  K + +    + +N+ A KAVA  +RTSLGP+GMDKM+QS +GDVTITNDGATIL QM V +  AK++VELS++QD E GDGTT VVVMAG+LL  A+ LL  GIHP  I+E ++ A+  A + L  ++  V+   + L  L +   T+LNSK      W+LA
Sbjct:   19 RERNFKDKDKPESVRNSNIVAAKAVADAVRTSLGPRGMDKMIQSGNGDVTITNDGATILNQMSVIHPTAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIHPTTISESFQSAAAEAEKILDEMSSPVDLSNDAL--LNKMATTSLNSKVVSQHSWLLA 183          
The following BLAST results are available for this feature:
BLAST of EY649692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
TCPD_MOUSE7.561e-3455.32T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_BOVIN9.875e-3455.32T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
THSA_ARCFU1.290e-3346.95Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]
THS_PYRAB1.684e-3347.56Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THS_DESSY1.684e-3348.17Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THSB_THEK81.684e-3348.17Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSB_THEK12.873e-3347.56Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSB_PYRKO2.873e-3347.56Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THSA_THEK82.873e-3347.56Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
TCPD_CAEEL2.873e-3349.10T-complex protein 1 subunit delta OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-002-D10-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649692 ID=EY649692; Name=EY649692; organism=Citrus sinensis; type=EST; length=859bp
AAAAACACTGAAAGTTCTACACTCTTCTTGTGAAGAGAAGTGGAAGGGGG
AGAGGAAGCAGCAGCTGTGAGAATCAAGGATAGGAGAAAATGGCGTTAGC
GTTCGACGAGTTCGGTCGACCGTTCATATTATTAAGGCAGCAAGAAAAGA
AGTCCAGATTGCGCGGACTCGATGCTCAGAAAGCCAACGTTTCGGCCGGC
AAAGCAGTGGCTCGGATCCTCCGAACCTCCCTCGGACCCAAGGGCATGGA
CAAGATGCTCCAAAGCCCCGACGGTGACGTCACCATTACAAATGATGGTG
CCACAATCCTGGAGCAGATGGATGTTGACAATCAAATTGCAAAGCTGATG
GTTGAATTGTCTCGGAGTCAGGACTATGAAATTGGTGATGGTACAACTGG
CGTTGTTGTTATGGCTGGTTCACTTTTANAGCAAGCTGAGAAGCTTTTGG
GAACGGGAATTCATCCTATTCGGATTGCAGAGGGCTATGAAATGGCTTCT
ANAATAGCTGTTGAACATTTANAACGTATAGCTCANAAAGTTGAGTTCCG
GTTGAATGACTTGGAGCCTTTGGTTCAAACTTGCATGACTACTTTAAATT
CAAAATGGTGGATCCTTGCAACCCAAATTGCCTGGAATTGGTGTCAAACC
GGGTTTTGCTGGGGCGACTTTTAAAAGGAAGGAGGTCAATTAATTGATAA
ATACGAAATTGGGGAGGTTGGGACCTGCCAATTGGATTCTGGGCAGGGAT
GGCCCCTAAACCCACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNANNN
NATTGAAAAGCGAAAATGGCATTTTGGCCTCGCCCCTTGGCCCCCCTAAC
ACAAAAAAA
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