EY649646 | Citrus Genome Database

Overview


Name	EY649646
Unique Name	EY649646
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	880

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.815e-55
Identity = 98/153 (64.05%), Postives = 118/153 (77.12%), Query Frame = 2

Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRG+VQLKRIENKINRQVTFSKRR G LKKAHEISVLCDAEVA I+FS KGKL+EY+TDS M+KILERYERY+YAE+ LI+ + ES+ NW  E   LKAKI+ +QK                   +H +GEDLESL+LK++QQLEQQL+++L
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQK-----------------CHKHLMGEDLESLNLKELQQLEQQLESSL 136

HSP 2 Score: 48.521 bits (114), Expect = 5.815e-55
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1

Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKEREK 762
            +HI SRK+ LM ESISELQKKE+S++E    L K++ ER+K
Sbjct:  137 KHIISRKSHLMLESISELQKKERSLQEENKALQKELVERQK 177

[Close]

BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.641e-49
Identity = 88/153 (57.52%), Postives = 112/153 (73.20%), Query Frame = 2

Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRG VQL+RIENKINRQVTFSKRR G LKKAHEISVLCDA+VA+I+FS KGKL+E+S+ S ME ILERY+RY++ ER ++ P+ E Q NW  E   LK+K+D LQK+Q                 R  LGE L++L++K++QQLE QL+ +L
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQ-----------------RQLLGEQLDTLTIKELQQLEHQLEYSL 136

HSP 2 Score: 48.1358 bits (113), Expect = 5.641e-49
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1

Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIK-EREKAAA-----HKLSGGIKXKTSSHT 816
            +HIRS+KNQL+ ESISELQKKEKS++   ++L K ++ E+EK  A      +   G    TSS T
Sbjct:  137 KHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREEQNGATPSTSSPT 201

[Close]

BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 5.641e-49
Identity = 88/153 (57.52%), Postives = 112/153 (73.20%), Query Frame = 2

Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRG VQL+RIENKINRQVTFSKRR G LKKAHEISVLCDA+VA+I+FS KGKL+E+S+ S ME ILERY+RY++ ER ++ P+ E Q NW  E   LK+K+D LQK+Q                 R  LGE L++L++K++QQLE QL+ +L
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQ-----------------RQLLGEQLDTLTIKELQQLEHQLEYSL 136

HSP 2 Score: 48.1358 bits (113), Expect = 5.641e-49
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1

Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIK-EREKAAA-----HKLSGGIKXKTSSHT 816
            +HIRS+KNQL+ ESISELQKKEKS++   ++L K ++ E+EK  A      +   G    TSS T
Sbjct:  137 KHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREEQNGATPSTSSPT 201

[Close]

BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.644e-38
Identity = 81/153 (52.94%), Postives = 108/153 (70.59%), Query Frame = 2

Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRGRV+LKRIENKINRQVTF+KRR G LKKA+E+SVLCDAEVA+I+FS++GKL+E+ + SCM K LERY+R +Y   +   P  E++ ++  E   LKAK+D+LQ++                  R+ LGEDL  LS K+++QLE QLD +L
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSYQ-EYLKLKAKVDVLQRSH-----------------RNLLGEDLGELSTKELEQLEHQLDKSL 135

HSP 2 Score: 28.4906 bits (62), Expect = 1.644e-38
Identity = 14/38 (36.84%), Postives = 24/38 (63.16%), Query Frame = 1

Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKE 753
            + IRS K Q M + +++LQKKE+ + E    L  +++E
Sbjct:  136 RQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEE 173

[Close]

BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.241e-36
Identity = 84/160 (52.50%), Postives = 108/160 (67.50%), Query Frame = 2

Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEK 661
            MGRGRV+LKRIENKINRQVTFSKRR G LKKA+E+SVLCDAEVA+IIFS +GKL+E+ + + + K LERY+   Y  +       E+Q +W  E + LKAK + LQ+ Q                 RH LGEDL  LS+K++QQLE+QL+ AL+ + Q K
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS-AGITKTLERYQHCCYNAQDSNNALSETQ-SWYHEMSKLKAKFEALQRTQ-----------------RHLLGEDLGPLSVKELQQLEKQLECALSQARQRK 141

HSP 2 Score: 29.261 bits (64), Expect = 4.241e-36
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 1

Query:  649 RSRKNQLMPESISELQKKEKSIEE 720
            R RK QLM E + EL++KE+ + E
Sbjct:  138 RQRKTQLMMEQVEELRRKERQLGE 161

[Close]

BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.244e-36
Identity = 73/149 (48.99%), Postives = 103/149 (69.13%), Query Frame = 2

Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQL 628
            MGRG+V L+RIENKI+RQVTF+KRR G LKKA+E+S+LCDAEVA+++FSH G+L+++S+ S M K LERY+RY YA +   AP  +  +N   E  NLKA +++LQ++Q                 R+ LGEDL  L+  +++QLE Q+
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQ-----------------RNLLGEDLAPLATNELEQLESQV 132

HSP 2 Score: 31.9574 bits (71), Expect = 4.244e-36
Identity = 13/44 (29.55%), Postives = 30/44 (68.18%), Query Frame = 1

Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKEREKAAA 771
            + IRSRK Q++ + + +L++KE+ +++   +L +++ E +  AA
Sbjct:  137 KQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDVEAA 180

[Close]

BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.221e-35
Identity = 81/161 (50.31%), Postives = 108/161 (67.08%), Query Frame = 2

Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAY-AERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEK 661
            MGRGRV+LKRIENKINRQVTFSKRR G LKKA+E+SVLCDAEVA+IIFS +GKL+E+ + + + K LE+Y    Y A+    A      ++W  E + LK K++ LQ++Q                 RH LGEDL  LS+K++QQLE+QL+ +L+ + Q K
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS-AGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQ-----------------RHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRK 143

HSP 2 Score: 31.187 bits (69), Expect = 1.221e-35
Identity = 16/41 (39.02%), Postives = 26/41 (63.41%), Query Frame = 1

Query:  649 RSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKEREKAAA 771
            R RK Q+M E + +L++KE+ + E    L KQ+K + +A A
Sbjct:  140 RQRKTQIMMEQVDDLRRKERQLGE----LNKQLKNKLEAEA 176

[Close]

BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 2.699e-35
Identity = 79/158 (50.00%), Postives = 109/158 (68.99%), Query Frame = 2

Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQ-----RNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRGRV+LKRIENKINRQVTF+KRR G LKKA+E+SVLCDAEVA+IIFS++GKL+E+ +   M K LE+Y++ +YA  +    + ES+     RN   E   LKA+++ LQ+ Q                 R+ LGEDL+SL +K+++ LE+QLD++L
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRN---EYLKLKARVENLQRTQ-----------------RNLLGEDLDSLGIKELESLEKQLDSSL 138

HSP 2 Score: 29.6462 bits (65), Expect = 2.699e-35
Identity = 10/38 (26.32%), Postives = 26/38 (68.42%), Query Frame = 1

Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKE 753
            +H+R+ + + + + ++ELQ+KE+ + E    L ++++E
Sbjct:  139 KHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEE 176

[Close]

BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 2.699e-35
Identity = 79/158 (50.00%), Postives = 109/158 (68.99%), Query Frame = 2

Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQ-----RNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRGRV+LKRIENKINRQVTF+KRR G LKKA+E+SVLCDAEVA+IIFS++GKL+E+ +   M K LE+Y++ +YA  +    + ES+     RN   E   LKA+++ LQ+ Q                 R+ LGEDL+SL +K+++ LE+QLD++L
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRN---EYLKLKARVENLQRTQ-----------------RNLLGEDLDSLGIKELESLEKQLDSSL 138

HSP 2 Score: 29.6462 bits (65), Expect = 2.699e-35
Identity = 10/38 (26.32%), Postives = 26/38 (68.42%), Query Frame = 1

Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKE 753
            +H+R+ + + + + ++ELQ+KE+ + E    L ++++E
Sbjct:  139 KHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEE 176

[Close]

BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.716e-34
Identity = 76/153 (49.67%), Postives = 101/153 (66.01%), Query Frame = 2

Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRG+V+LKRIENKI+RQVTF+KRR G LKKA+E+S+LCDAEVA+IIFS +G+LFE+S+ SCM K LERY    Y  +   AP+ E       E   LK +++ LQ  Q                 R+ LGEDL  LS+K+++QLE Q++ +L
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEINYQ---EYLKLKTRVEFLQTTQ-----------------RNILGEDLGPLSMKELEQLENQIEVSL 133

HSP 2 Score: 29.6462 bits (65), Expect = 1.716e-34
Identity = 13/38 (34.21%), Postives = 26/38 (68.42%), Query Frame = 1

Query:  640 QHIRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKE 753
            + IRSRKNQ + + + +L+ KE+ +++    L K+++E
Sbjct:  134 KQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQE 171

The following BLAST results are available for this feature:

BLAST of EY649646 vs. ExPASy Swiss-Prot

BLAST of EY649646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118


Match Name	E-value	Identity	Description
MAD15_ORYSJ	5.815e-55	64.05	MADS-box transcription factor 15 OS=Oryza sativa s...	[more]
MAD18_ORYSJ	5.641e-49	57.52	MADS-box transcription factor 18 OS=Oryza sativa s...	[more]
MAD18_ORYSI	5.641e-49	57.52	MADS-box transcription factor 18 OS=Oryza sativa s...	[more]
CMB1_DIACA	1.644e-38	52.94	MADS-box protein CMB1 OS=Dianthus caryophyllus GN=...	[more]
MADS6_ORYSJ	4.241e-36	52.50	MADS-box transcription factor 6 OS=Oryza sativa su...	[more]
MAD34_ORYSJ	4.244e-36	48.99	MADS-box transcription factor 34 OS=Oryza sativa s...	[more]
MAD17_ORYSJ	1.221e-35	50.31	MADS-box transcription factor 17 OS=Oryza sativa s...	[more]
MADS7_ORYSJ	2.699e-35	50.00	MADS-box transcription factor 7 OS=Oryza sativa su...	[more]
MADS7_ORYSI	2.699e-35	50.00	MADS-box transcription factor 7 OS=Oryza sativa su...	[more]
MADS1_ORYSJ	1.716e-34	49.67	MADS-box transcription factor 1 OS=Oryza sativa su...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-001-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY649646 ID=EY649646; Name=EY649646; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGANAAGAAGAAATCCTTTTATGAGATATTAGATTTGGGTT
TCTGTTTTTGGAGGGGCTTTGGTTGTTGGGTTTCTTTGGGGGAAAGAGAA
AAAAAAAAGAATAGAAATTATCAAATAATCTGTGTGAGACAGAGAGAGAG
TGAGACAGATCATACAGAAGAATTCATAACAATGGGAAGAGGTAGGGTTC
AGCTGAAGAGAATAGAGAACAAGATCAATCGCCAAGTTACCTTTTCCAAA
CGGAGAGCTGGCTTCTTGAAGAAAGCTCATGAGATCTCTGTGTTATGTGA
TGCTGAAGTTGCTGTTATTATCTTCTCTCACAAAGGGAAGCTCTTTGAAT
ACTCCACTGACTCTTGCATGGAAAAGATACTGGAACGCTATGAGAGGTAC
GCCTATGCTGAGAGACAGCTGATTGCCCCTGATCCTGAATCACAGCGTAA
CTGGCCCCTGGAGTGCAACAACCTTAAGGCTAAGATAGATCTTCTGCAGA
AAAACCAAAGATGTTCTTCCAAAAGTACATTCTACACTGGTTCTCAAATT
GACCTCTTCAGGCACTATTTGGGAGAAGATTTAGAGTCTCTGTCCCTCAA
AGACATCCAACAGTTGGAGCAACAGCTGGACACCGCTCTCAACACATCAG
ATCAAGAAAAAATCAACTCATGCCAGAGTCCATCTCTGAGCTTCAGAAAA
AAGAAAAGTCTATAGAGGAGCCANNACACTTGCTGGTAAAGCAGATTAAG
GAGAGAGAGAAGGCTGCAGCGCACAAGCTCAGTGGGGGGATCAAATNCAA
AACCAGTTCCCACACATTATTCTTCTACTTNCCAGCCACTNNCTGCTTAG
ACTGGGCGGTGCCTACCAGACAGGCATCGA