EY702805

Overview
NameEY702805
Unique NameEY702805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702805 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.585e-18
Identity = 61/187 (32.62%), Postives = 90/187 (48.13%), Query Frame = 3
Query:  339 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIHN-------------GLDLEDKLHPGGSFDPLGLAKDPDQFALLKVNEIKNGRLAMLAMPGFFLPA*APGEGQWRTLL 860
            P YLTG +PGD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F   G    P+  W+  G          YF  +  + ++  +++  V +    +  I N              L   +  +PGG F+PL  A   +     K  EI NGRLAMLA  GF +     G+G +  LL
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLE----AKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLL 234          
BLAST of EY702805 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.275e-17
Identity = 58/119 (48.74%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  501 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIHNGLDLE--DKLHPGGSFDPLGLAKDPDQFALLKVNEIKNGRLAMLAMPGFFLPA*APGEG 842
            KFG     EAVWFK GA +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D L+PG +FDPLGLA DP+  A LKV EIKNGRLAM +M GFF+ A   G+G
Sbjct:    9 KFG-----EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 122          
BLAST of EY702805 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  627 EIVLVGGAEYYRIHNGL--DLEDKLHPGGSFDPLGLAKDPDQFALLKVNEIKNGRLAMLAMPGFFLPA*APGEGQWRTL 857
            ++VL+G  E YRI  G   ++ D L+PGGSFDPLGLA+DP+ FA LKV EIKNGRLAM +M GFF+ A   G+G    L
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244          
BLAST of EY702805 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  627 EIVLVGGAEYYRIHNGL--DLEDKLHPGGSFDPLGLAKDPDQFALLKVNEIKNGRLAMLAMPGFFLPA*APGEGQWRTL 857
            ++VL+G  E YRI  G   ++ D L+PGGSFDPLGLA+DP+ FA LKV EIKNGRLAM +M GFF+ A   G+G    L
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244          
BLAST of EY702805 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  627 EIVLVGGAEYYRIHNGL--DLEDKLHPGGSFDPLGLAKDPDQFALLKVNEIKNGRLAMLAMPGFFLPA*APGEGQWRTL 857
            ++VL+G  E YRI  G   ++ D L+PGGSFDPLGLA+DP+ FA LKV EIKNGRLAM +M GFF+ A   G+G    L
Sbjct:   15 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 93          
BLAST of EY702805 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  627 EIVLVGGAEYYRIHNGL--DLEDKLHPGGSFDPLGLAKDPDQFALLKVNEIKNGRLAMLAMPGFFLPA*APGEGQWRTL 857
            ++VL+G  E YRI  G   ++ D L+PGGSFDPLGLA+DP+ FA LKV EIKNGRLAM +M GFF+ A   G+G    L
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of EY702805 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  627 EIVLVGGAEYYRIHNGL--DLEDKLHPGGSFDPLGLAKDPDQFALLKVNEIKNGRLAMLAMPGFFLPA*APGEGQWRTL 857
            ++VL+G  E YRI  G   ++ D L+PGGSFDPLGLA+DP+ FA LKV EIKNGRLAM +M GFF+ A   G+G    L
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of EY702805 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.355e-14
Identity = 45/86 (52.33%), Postives = 55/86 (63.95%), Query Frame = 3
Query:  603 NLVFAVIAEIVLVGGAEYYRIHN------GLDLEDKLHPGGSFDPLGLAKDPDQFALLKVNEIKNGRLAMLAMPGFFLPA*APGEG 842
            +L+  +  +++L+G  E YR  N      G DL D+L+PGG FDPLGLA DPD F  LKV EIKNGRLAM  M GF+  A   GEG
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEG 94          
BLAST of EY702805 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.075e-14
Identity = 57/174 (32.76%), Postives = 80/174 (45.98%), Query Frame = 3
Query:  330 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIHNGLDLE----DKLHPGGSFDPLGLAKDPDQFALLKVNEIKNGRLAMLAMPGFFLPA*APGE 839
            +E P  LTGE P D G+DP  L+  PD +++ +  E+ H R AML   G I+PE   K          WF+ G   +DG  L +                + +    EY+R   G + +    D+ +PG  FDPL L  D  + A     E+KNGRLA+ A+ G      A GE
Sbjct:  194 AEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELLGK--------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQKGELDRSYPG--FDPLNLTTDYTRAA-----EVKNGRLALTAVAGLTAQYLATGE 337          

HSP 2 Score: 74.3294 bits (181), Expect = 9.893e-13
Identity = 59/180 (32.78%), Postives = 82/180 (45.56%), Query Frame = 3
Query:  339 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIHNGL-----DLEDKLHPGGSFDPLGLAKDPDQFALLKVNEIKNGRLAMLAMPGFFLPA*APGEGQWRTLLN 863
            P YLTGE  GD G+DP GL+  P  F + Q  E+ H R +ML   G ++PE              WF+    + D    N           FAV+A + +V   EY+R + G      +  D+ +PG  FDPL L  +       K  EIKNGRLAM  M G  + +   G+     L++
Sbjct:  381 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG--------NGAWFQ----IWDKVDFNR----------FAVVA-LQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFGLEVQSHVTGKSPINNLID 530          
BLAST of EY702805 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.603e-13
Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  627 EIVLVGGAEYYRIHNGLDL---EDKLHPGGSFDPLGLAKDPDQFALLKVNEIKNGRLAMLAMPGFFLPA*APGEGQWRTL 857
            +++L+G  E YR+     L   ED L+PGGSFDPL    DP+ FA LKV EIKNGRLAM +M GFF+ A   G+G    L
Sbjct:   22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 101          
The following BLAST results are available for this feature:
BLAST of EY702805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB24_PEA4.585e-1832.62Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB22_PINSY2.275e-1748.74Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB2F_SOLLC4.291e-1656.96Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC4.291e-1656.96Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC4.291e-1656.96Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC4.291e-1656.96Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC4.291e-1656.96Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_EUGGR2.355e-1452.33Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
LH18_EUGGR3.075e-1432.76Light-harvesting complex I LH38 proteins (Fragment... [more]
CB21_RAPSA2.603e-1351.25Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-D11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702805 ID=EY702805; Name=EY702805; organism=Citrus sinensis; type=EST; length=874bp
TCCGTCGACCCCGCGTCCGCTCTAACCTAACAAGCAGCAGCAGCAACACT
CTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGG
AGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGA
CTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTC
TTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGT
CTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAA
TTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTG
ACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCAA
GAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCCA
GATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAAC
AAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGC
TCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAACATCCCAA
TCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGTGGTGCT
GAATATTATAGAATCCACAACGGTTTGGATTTGGAAGACAAGCTTCACCC
AGGTGGCTCATTTGACCCCCTGGGATTAGCAAAGGATCCTGACCAATTTG
CATTGCTAAAAGTGAACGAGATCAAGAATGGAAGACTTGCCATGCTTGCC
ATGCCTGGGTTCTTTCTCCCAGCTTAGGCACCAGGGGAAGGCCAGTGGAG
AACCTTGCTAAACATTCACGGAAT
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