EY649570

Overview
NameEY649570
Unique NameEY649570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY649570_ssr467 microsatellite EY649570_ssr467:467..478. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY649570 vs. ExPASy Swiss-Prot
Match: CP239_MOUSE (Cytochrome P450 2C39 OS=Mus musculus GN=Cyp2c39 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 55/183 (30.05%), Postives = 87/183 (47.54%), Query Frame = 3
Query:  102 IGNLHQLESTNLHYQLWNLSKKYGPLMSLRLGLVQTVVVSSVKIAKEALKTHDVEFSGKPTLVGQQRLTYNGLDIVFAPYNDKWKEMRKLCVTHLFNASR-VRHFRPVREDEVARMIEEIXXXXXXXXXXTTVVINLSERLMSLTNSVIFRVAFGKNVENKAGDRSKVHSLLDEN*SVLGAXY 647
            IGN  Q++  N    L N SK YGP+ +L LG   TVV+   +  KEAL  H  EFS + ++   +++  NGL IVF+  N +WKE+R+  +T L N     R+     ++E   ++EE+          T +       L     +VI  + F    + K  D   +   L+EN  +L + +
Sbjct:   39 IGNFLQIDMKNFSQSLTNFSKAYGPVFTLYLGSRPTVVLHGYEAVKEALIDHGEEFSDRGSIPMVEKIN-NGLGIVFSNGN-RWKEIRRFTLTTLRNLGMGKRNIEDRVQEEAQCLVEELRKTKGSPCDPTFI-------LSCAPCNVICSIIFQDRFDYKDKDFLMLMEKLNENVKILSSPW 212          
BLAST of EY649570 vs. ExPASy Swiss-Prot
Match: C82A1_PEA (Cytochrome P450 82A1 (Fragment) OS=Pisum sativum GN=CYP82A1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.502e-11
Identity = 36/120 (30.00%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  102 IGNLHQLESTNL-HYQLWNLSKKYGPLMSLRLGLVQTVVVSSVKIAKEALKTHDVEFSGKPTLVGQQRLTYNGLDIVFAPYNDKWKEMRKLCVTHLFNASRVRHFRPVREDEVARMIEEI 458
            +G+L  + +T   H  L  L  KYGP+ +++LG    +V+S+ ++AKE    +D+  S +P  V  + ++YN   I +APY   W+++RK+    + +  R+     +R  EV   I+E+
Sbjct:   45 LGHLPLMRNTQTPHKTLGALVDKYGPIFTIKLGATNALVLSNWELAKECFTKNDIVVSSRPKPVAVELMSYNQAFIGWAPYGAYWRQLRKIVTLEILSNRRIELLSHIRVSEVQTSIKEL 164          
BLAST of EY649570 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 41/148 (27.70%), Postives = 73/148 (49.32%), Query Frame = 3
Query:  138 HYQLWNLSKKYGPLMSLRLGLVQTVVVSSVKIAKEALKTHDVEFSGKPTLVGQQRLTYNGLDIVFAPYNDKWKEMRKLCVTHLFNASRVRHFRPVREDEVARMIEEIXXXXXXXXXXTTVVINLSERLMSLTNSVIFRVAFGKNVENK 581
            H  L + +K++G +  LR+G    VVVSS ++AKE L T  VEF  +   V     T  G D+VF  Y + W++MR++     F    V+ +R   E E   ++ ++              I + +RL  +  ++++R+ F +  E++
Sbjct:   55 HRNLTDYAKRFGEIFLLRMGQRNLVVVSSPELAKEVLHTQCVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWESEAESVVNDVKNNAEASVGG----IVIRKRLQLMMYNIMYRIMFDRRFESE 198          
BLAST of EY649570 vs. ExPASy Swiss-Prot
Match: CP17A_PERLE (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Peromyscus leucopus GN=Cyp17a1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.347e-11
Identity = 42/150 (28.00%), Postives = 71/150 (47.33%), Query Frame = 3
Query:  132 NLHYQLWNLSKKYGPLMSLRLGLVQTVVVSSVKIAKEALKTHDVEFSGKPTLVGQQRLTYNGLDIVFAPYNDKWKEMRKLCVTHLFNASRVRHFRPVREDEVARMIEEIXXXXXXXXXXTTVVINLSERLMSLTNSVIFRVAFGKNVENK 581
            ++H   + L +KYGP+ SLRLG + TV++   ++A+E L     EFSG+P +V    L+  G  I FA  +D W+  RKL +      S    FR   +     + +E               ++LS+ +     ++I  + F  + EN+
Sbjct:   48 HMHVNFFKLQEKYGPIYSLRLGTIPTVIIGQYQLAREVLIKKGKEFSGRPQMVTLGLLSNQGKGIAFADSDDAWQLHRKLAL------SSFALFRDGDQRLETIICQEASSLCDLLLTHNEESVDLSQPIFMSVTNIICAICFSTSYENR 191          
BLAST of EY649570 vs. ExPASy Swiss-Prot
Match: C76C3_ARATH (Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CYP76C3 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 40/121 (33.06%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  102 IGNLHQLESTNLHYQLWNLSKKYGPLMSLRLGLVQTVVVSSVKIAKEALKTHDVEFSGKPTLVGQQRLTYNGLDIVFAPYNDKWKEMRKLCVTHLF---NASRVRHFRPVREDEVARMIEE 455
            +GN+ QL   N H  L   SK YGP+MSL+LG +  VV+SS + AKEAL+THD   S +      +   ++   IV+ P + +W+ ++K    +L    N   ++  R  + +E+  ++ E
Sbjct:   48 VGNIFQL-GFNPHRSLAAFSKTYGPIMSLKLGRLTAVVISSPEAAKEALRTHDHVMSARTFNDALRAFDHHKHSIVWIPPSARWRFLKKTITKYLLSPQNLDAIQSLRMRKVEELVSLVNE 167          
The following BLAST results are available for this feature:
BLAST of EY649570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
CP239_MOUSE1.150e-1130.05Cytochrome P450 2C39 OS=Mus musculus GN=Cyp2c39 PE... [more]
C82A1_PEA1.502e-1130.00Cytochrome P450 82A1 (Fragment) OS=Pisum sativum G... [more]
TCMO_MEDSA1.962e-1127.70Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]
CP17A_PERLE3.347e-1128.00Steroid 17-alpha-hydroxylase/17,20 lyase OS=Peromy... [more]
C76C3_ARATH9.739e-1133.06Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CY... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-B02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649570 ID=EY649570; Name=EY649570; organism=Citrus sinensis; type=EST; length=900bp
CTCCCAGTAATCTTTTACTTTCTTCATCTCCAAGGCAAACTCATAAACAA
ACCCAAATGACAAGTGCTTTATTACCACCAGGACCTCGAGGTCTTCCCTT
AATCGGAAACCTACACCAGCTTGAAAGCACAAACCTTCATTACCAACTCT
GGAATCTCTCTAAAAAATATGGTCCACTGATGTCACTACGCCTTGGCCTT
GTGCAGACCGTAGTAGTTTCTTCAGTGAAAATAGCAAAAGAGGCTTTGAA
AACCCATGATGTTGAATTTAGCGGCAAGCCAACCTTGGTTGGCCAGCAAA
GATTAACCTACAATGGCTTAGATATTGTCTTTGCTCCATACAACGACAAG
TGGAAAGAGATGAGGAAATTATGTGTCACTCATCTTTTTAATGCCAGCAG
AGTCCGCCATTTTCGTCCCGTGAGAGAAGATGAGGTGGCACGTATGATCG
AGGAGATTTCATCAAGATCATCATCATCACCATCGCCAACAACGGTGGTG
ATTAATCTGAGTGAGCGTTTAATGTCACTTACAAATTCGGTCATATTTAG
GGTTGCATTCGGGAAGAATGTTGAGAATAAAGCTGGCGATAGAAGCAAAG
TCCACTCGTTACTTGATGAGAACTAGAGTGTGCTGGGAGCCNTCTATTTC
AAAGATTTTTTTCCTTTCTTCGTGGTTTTTTTGATAAGCTCTCCGGAATC
ATTAGTCGTCTCGAAAACAACTTCAAAGAGTTGATGCATTTTACCAACAC
TCATCGAGGACATGCAGATCCTATAGACCAAAGACCAGTACGCGGGAATA
TAGTGATGTTTACTTCAAGTCNAAAAGATCGGGGGAGGATCCAGTCATGG
ATCACTGGGGAAACATCAAACTGGGTCATGAATGGGTTGTCGGGGCACGG
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